Cluster: HRGMv2_4688_CGC2
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate: alpha-glucan
- Genome ID: HRGMv2_4688
- CGC Family ID: CGCFAM_00037
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4688_1 | HRGMv2_4688_1_18 | 20122 | 22773 | - | CBM41 | GH13_14 |
| NULL(UNKNOWN) | HRGMv2_4688_1 | HRGMv2_4688_1_19 | 22820 | 23560 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_4688_1 | HRGMv2_4688_1_20 | 23550 | 24191 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4688_1 | HRGMv2_4688_1_21 | 24202 | 26745 | - | 3.A.1.1.26 |
| CAZyme | HRGMv2_4688_1 | HRGMv2_4688_1_22 | 26768 | 28387 | - | GH13_36 |
| TC | HRGMv2_4688_1 | HRGMv2_4688_1_23 | 28392 | 29270 | - | 3.A.1.1.27 |
| TC | HRGMv2_4688_1 | HRGMv2_4688_1_24 | 29270 | 30805 | - | 3.A.1.1.27 |
| pfam | HRGMv2_4688_1 | HRGMv2_4688_1_25 | 30868 | 32130 | - | SBP_bac_8 |
| NULL(UNKNOWN) | HRGMv2_4688_1 | HRGMv2_4688_1_26 | 32479 | 32955 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4688_1 | HRGMv2_4688_1_27 | 32972 | 34690 | + | CBM34 | GH13_20 |
Gene ID: HRGMv2_4688_1_18
Type: CAZyme
Location: 20122 - 22773 (-)
Type: CAZyme
Location: 20122 - 22773 (-)
Gene ID: HRGMv2_4688_1_19
Type:
Location: 22820 - 23560 (-)
Type:
Location: 22820 - 23560 (-)
Gene ID: HRGMv2_4688_1_20
Type:
Location: 23550 - 24191 (-)
Type:
Location: 23550 - 24191 (-)
Gene ID: HRGMv2_4688_1_21
Type: TC
Location: 24202 - 26745 (-)
Type: TC
Location: 24202 - 26745 (-)
Gene ID: HRGMv2_4688_1_22
Type: CAZyme
Location: 26768 - 28387 (-)
Type: CAZyme
Location: 26768 - 28387 (-)
Gene ID: HRGMv2_4688_1_23
Type: TC
Location: 28392 - 29270 (-)
Type: TC
Location: 28392 - 29270 (-)
Gene ID: HRGMv2_4688_1_24
Type: TC
Location: 29270 - 30805 (-)
Type: TC
Location: 29270 - 30805 (-)
Gene ID: HRGMv2_4688_1_25
Type: pfam
Location: 30868 - 32130 (-)
Type: pfam
Location: 30868 - 32130 (-)
Gene ID: HRGMv2_4688_1_26
Type:
Location: 32479 - 32955 (+)
Type:
Location: 32479 - 32955 (+)
Gene ID: HRGMv2_4688_1_27
Type: CAZyme
Location: 32972 - 34690 (+)
Type: CAZyme
Location: 32972 - 34690 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
RFN20
Family
CAG-826
Genus
CAJOOD01
Species
CAJOOD01 sp019421105
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.