Cluster: HRGMv2_4683_CGC6
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4683
- CGC Family ID: CGCFAM_01531
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4683_27 | HRGMv2_4683_27_12 | 12133 | 16131 | + | 2.A.6.3.6 |
| NULL(UNKNOWN) | HRGMv2_4683_27 | HRGMv2_4683_27_13 | 16317 | 17441 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4683_27 | HRGMv2_4683_27_14 | 17748 | 20309 | - | 3.A.9.1.2 |
| pfam | HRGMv2_4683_27 | HRGMv2_4683_27_15 | 20441 | 20941 | - | QueT |
| CAZyme | HRGMv2_4683_27 | HRGMv2_4683_27_16 | 21100 | 22365 | + | GH18 |
Gene ID: HRGMv2_4683_27_12
Type: TC
Location: 12133 - 16131 (+)
Type: TC
Location: 12133 - 16131 (+)
Gene ID: HRGMv2_4683_27_13
Type:
Location: 16317 - 17441 (+)
Type:
Location: 16317 - 17441 (+)
Gene ID: HRGMv2_4683_27_14
Type: TC
Location: 17748 - 20309 (-)
Type: TC
Location: 17748 - 20309 (-)
Gene ID: HRGMv2_4683_27_15
Type: pfam
Location: 20441 - 20941 (-)
Type: pfam
Location: 20441 - 20941 (-)
Gene ID: HRGMv2_4683_27_16
Type: CAZyme
Location: 21100 - 22365 (+)
Type: CAZyme
Location: 21100 - 22365 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
RFN20
Family
CAG-449
Genus
CAG-449
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.