Cluster: HRGMv2_4683_CGC4
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4683
- CGC Family ID: CGCFAM_00638
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4683_8 | HRGMv2_4683_8_18 | 23011 | 24738 | - | 3.A.1.135.5 |
| pfam | HRGMv2_4683_8 | HRGMv2_4683_8_19 | 24741 | 26717 | - | BRCT | DNA_ligase_aden | DNA_ligase_ZBD | DNA_ligase_OB | PTCB-BRCT | HHH_2 | HHH_5 | Nlig-Ia |
| pfam | HRGMv2_4683_8 | HRGMv2_4683_8_20 | 26833 | 27774 | - | fn3 | fn3 |
| CAZyme | HRGMv2_4683_8 | HRGMv2_4683_8_21 | 28234 | 30150 | + | GH2 |
Gene ID: HRGMv2_4683_8_18
Type: TC
Location: 23011 - 24738 (-)
Type: TC
Location: 23011 - 24738 (-)
Gene ID: HRGMv2_4683_8_19
Type: pfam
Location: 24741 - 26717 (-)
Type: pfam
Location: 24741 - 26717 (-)
Gene ID: HRGMv2_4683_8_20
Type: pfam
Location: 26833 - 27774 (-)
Type: pfam
Location: 26833 - 27774 (-)
Gene ID: HRGMv2_4683_8_21
Type: CAZyme
Location: 28234 - 30150 (+)
Type: CAZyme
Location: 28234 - 30150 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
RFN20
Family
CAG-449
Genus
CAG-449
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.