Cluster: HRGMv2_4679_CGC2
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_4679
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4679_2 | HRGMv2_4679_2_50 | 80488 | 81456 | - | 1.A.33.1.5 |
| pfam | HRGMv2_4679_2 | HRGMv2_4679_2_51 | 81952 | 83205 | + | AAA_14 | DUF4143 |
| CAZyme | HRGMv2_4679_2 | HRGMv2_4679_2_52 | 83338 | 84513 | + | GH53 |
| pfam | HRGMv2_4679_2 | HRGMv2_4679_2_53 | 84755 | 86068 | + | AAA_14 | DUF4143 |
| pfam | HRGMv2_4679_2 | HRGMv2_4679_2_54 | 86198 | 86659 | + | Acetyltransf_1 | Acetyltransf_4 | Acetyltransf_7 | Acetyltransf_9 | Acetyltransf_10 |
| TC | HRGMv2_4679_2 | HRGMv2_4679_2_55 | 86839 | 87453 | + | 2.A.51.1.6 |
| TC | HRGMv2_4679_2 | HRGMv2_4679_2_56 | 87440 | 88012 | + | 2.A.51.1.6 |
| STP | HRGMv2_4679_2 | HRGMv2_4679_2_57 | 88030 | 88524 | + | NUDIX |
| CAZyme | HRGMv2_4679_2 | HRGMv2_4679_2_58 | 88571 | 90061 | - | GH77 |
| pfam | HRGMv2_4679_2 | HRGMv2_4679_2_59 | 90372 | 91802 | + | SBP_bac_8 |
| TC | HRGMv2_4679_2 | HRGMv2_4679_2_60 | 91870 | 93399 | + | 3.A.1.1.27 |
| TC | HRGMv2_4679_2 | HRGMv2_4679_2_61 | 93399 | 94259 | + | 3.A.1.1.27 |
| CAZyme | HRGMv2_4679_2 | HRGMv2_4679_2_62 | 94263 | 95861 | + | GH13_36 |
| TC | HRGMv2_4679_2 | HRGMv2_4679_2_63 | 95863 | 98475 | + | 3.A.1.1.26 |
| NULL(UNKNOWN) | HRGMv2_4679_2 | HRGMv2_4679_2_64 | 98530 | 99870 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4679_2 | HRGMv2_4679_2_65 | 99981 | 102629 | + | CBM41 | GH13_14 |
| NULL(UNKNOWN) | HRGMv2_4679_2 | HRGMv2_4679_2_66 | 102626 | 103372 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_4679_2 | HRGMv2_4679_2_67 | 103364 | 103807 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4679_2 | HRGMv2_4679_2_68 | 103899 | 105599 | + | CBM34 | GH13_20 |
Gene ID: HRGMv2_4679_2_50
Type: TC
Location: 80488 - 81456 (-)
Type: TC
Location: 80488 - 81456 (-)
Gene ID: HRGMv2_4679_2_51
Type: pfam
Location: 81952 - 83205 (+)
Type: pfam
Location: 81952 - 83205 (+)
Gene ID: HRGMv2_4679_2_52
Type: CAZyme
Location: 83338 - 84513 (+)
Type: CAZyme
Location: 83338 - 84513 (+)
Gene ID: HRGMv2_4679_2_53
Type: pfam
Location: 84755 - 86068 (+)
Type: pfam
Location: 84755 - 86068 (+)
Gene ID: HRGMv2_4679_2_54
Type: pfam
Location: 86198 - 86659 (+)
Type: pfam
Location: 86198 - 86659 (+)
Gene ID: HRGMv2_4679_2_55
Type: TC
Location: 86839 - 87453 (+)
Type: TC
Location: 86839 - 87453 (+)
Gene ID: HRGMv2_4679_2_56
Type: TC
Location: 87440 - 88012 (+)
Type: TC
Location: 87440 - 88012 (+)
Gene ID: HRGMv2_4679_2_57
Type: STP
Location: 88030 - 88524 (+)
Type: STP
Location: 88030 - 88524 (+)
Gene ID: HRGMv2_4679_2_58
Type: CAZyme
Location: 88571 - 90061 (-)
Type: CAZyme
Location: 88571 - 90061 (-)
Gene ID: HRGMv2_4679_2_59
Type: pfam
Location: 90372 - 91802 (+)
Type: pfam
Location: 90372 - 91802 (+)
Gene ID: HRGMv2_4679_2_60
Type: TC
Location: 91870 - 93399 (+)
Type: TC
Location: 91870 - 93399 (+)
Gene ID: HRGMv2_4679_2_61
Type: TC
Location: 93399 - 94259 (+)
Type: TC
Location: 93399 - 94259 (+)
Gene ID: HRGMv2_4679_2_62
Type: CAZyme
Location: 94263 - 95861 (+)
Type: CAZyme
Location: 94263 - 95861 (+)
Gene ID: HRGMv2_4679_2_63
Type: TC
Location: 95863 - 98475 (+)
Type: TC
Location: 95863 - 98475 (+)
Gene ID: HRGMv2_4679_2_64
Type:
Location: 98530 - 99870 (+)
Type:
Location: 98530 - 99870 (+)
Gene ID: HRGMv2_4679_2_65
Type: CAZyme
Location: 99981 - 102629 (+)
Type: CAZyme
Location: 99981 - 102629 (+)
Gene ID: HRGMv2_4679_2_66
Type:
Location: 102626 - 103372 (+)
Type:
Location: 102626 - 103372 (+)
Gene ID: HRGMv2_4679_2_67
Type:
Location: 103364 - 103807 (-)
Type:
Location: 103364 - 103807 (-)
Gene ID: HRGMv2_4679_2_68
Type: CAZyme
Location: 103899 - 105599 (+)
Type: CAZyme
Location: 103899 - 105599 (+)
Taxonomic Lineage
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.