Cluster: HRGMv2_4679_CGC10
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4679
- CGC Family ID: CGCFAM_00861
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4679_5 | HRGMv2_4679_5_43 | 53750 | 55450 | + | 3.A.16.1.1 |
| pfam | HRGMv2_4679_5 | HRGMv2_4679_5_44 | 55584 | 56753 | + | Exo_endo_phos |
| CAZyme | HRGMv2_4679_5 | HRGMv2_4679_5_45 | 56888 | 59353 | + | GH3 |
| NULL(UNKNOWN) | HRGMv2_4679_5 | HRGMv2_4679_5_46 | 59355 | 60230 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4679_5 | HRGMv2_4679_5_47 | 60245 | 61279 | + | GT2 |
Gene ID: HRGMv2_4679_5_43
Type: TC
Location: 53750 - 55450 (+)
Type: TC
Location: 53750 - 55450 (+)
Gene ID: HRGMv2_4679_5_44
Type: pfam
Location: 55584 - 56753 (+)
Type: pfam
Location: 55584 - 56753 (+)
Gene ID: HRGMv2_4679_5_45
Type: CAZyme
Location: 56888 - 59353 (+)
Type: CAZyme
Location: 56888 - 59353 (+)
Gene ID: HRGMv2_4679_5_46
Type:
Location: 59355 - 60230 (+)
Type:
Location: 59355 - 60230 (+)
Gene ID: HRGMv2_4679_5_47
Type: CAZyme
Location: 60245 - 61279 (+)
Type: CAZyme
Location: 60245 - 61279 (+)
Taxonomic Lineage
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.