Cluster: HRGMv2_4678_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4678
- CGC Family ID: CGCFAM_02686
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4678_1 | HRGMv2_4678_1_4 | 4639 | 5586 | + | 3.A.1.1.4 |
| TC | HRGMv2_4678_1 | HRGMv2_4678_1_5 | 5588 | 6505 | + | 3.A.1.1.11 |
| CAZyme | HRGMv2_4678_1 | HRGMv2_4678_1_6 | 6508 | 8115 | + | GH43_33 |
| NULL(UNKNOWN) | HRGMv2_4678_1 | HRGMv2_4678_1_7 | 8112 | 9917 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4678_1 | HRGMv2_4678_1_8 | 9917 | 11293 | + | 3.A.1.1.26 |
| CAZyme | HRGMv2_4678_1 | HRGMv2_4678_1_9 | 11293 | 12246 | + | GH43_26 |
Gene ID: HRGMv2_4678_1_4
Type: TC
Location: 4639 - 5586 (+)
Type: TC
Location: 4639 - 5586 (+)
Gene ID: HRGMv2_4678_1_5
Type: TC
Location: 5588 - 6505 (+)
Type: TC
Location: 5588 - 6505 (+)
Gene ID: HRGMv2_4678_1_6
Type: CAZyme
Location: 6508 - 8115 (+)
Type: CAZyme
Location: 6508 - 8115 (+)
Gene ID: HRGMv2_4678_1_7
Type:
Location: 8112 - 9917 (+)
Type:
Location: 8112 - 9917 (+)
Gene ID: HRGMv2_4678_1_8
Type: TC
Location: 9917 - 11293 (+)
Type: TC
Location: 9917 - 11293 (+)
Gene ID: HRGMv2_4678_1_9
Type: CAZyme
Location: 11293 - 12246 (+)
Type: CAZyme
Location: 11293 - 12246 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
RFN20
Family
CAG-826
Genus
UBA4951
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.