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Cluster: HRGMv2_4655_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4655_6 HRGMv2_4655_6_12 7712 8647 - GT2
pfam HRGMv2_4655_6 HRGMv2_4655_6_13 8745 9668 - DAGK_cat | YegS_C
pfam HRGMv2_4655_6 HRGMv2_4655_6_14 9761 10216 - GtrA_DPMS_TM
CAZyme HRGMv2_4655_6 HRGMv2_4655_6_15 10232 11014 - GH25
pfam HRGMv2_4655_6 HRGMv2_4655_6_16 10992 12185 - Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1
NULL(UNKNOWN) HRGMv2_4655_6 HRGMv2_4655_6_17 12190 13440 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4655_6 HRGMv2_4655_6_18 13449 15764 - GT2 | GT4
STP HRGMv2_4655_6 HRGMv2_4655_6_19 15766 18216 - Fer4
TC HRGMv2_4655_6 HRGMv2_4655_6_20 18309 18956 - 3.A.12.1.3
NULL(UNKNOWN) HRGMv2_4655_6 HRGMv2_4655_6_21 18959 19252 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4655_6 HRGMv2_4655_6_22 19330 20112 - 3.A.1.103.4
TC HRGMv2_4655_6 HRGMv2_4655_6_23 20109 20852 - 3.A.1.103.4
pfam HRGMv2_4655_6 HRGMv2_4655_6_24 20910 22244 - DUF6056
pfam HRGMv2_4655_6 HRGMv2_4655_6_25 22257 23339 - Acyl_transf_3
CAZyme HRGMv2_4655_6 HRGMv2_4655_6_26 23351 24058 - CE3
pfam HRGMv2_4655_6 HRGMv2_4655_6_27 24074 25399 - DUF6056
CAZyme HRGMv2_4655_6 HRGMv2_4655_6_28 25418 26359 - GT2
CAZyme HRGMv2_4655_6 HRGMv2_4655_6_29 26352 27302 - GT2
pfam HRGMv2_4655_6 HRGMv2_4655_6_30 27299 27796 - DUF7666
CAZyme HRGMv2_4655_6 HRGMv2_4655_6_31 27799 28716 - GT2
CAZyme HRGMv2_4655_6 HRGMv2_4655_6_32 28716 31025 - GT4
pfam HRGMv2_4655_6 HRGMv2_4655_6_33 31100 32104 - adh_short | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd
CAZyme HRGMv2_4655_6 HRGMv2_4655_6_34 32118 33002 - CE3
Gene ID: HRGMv2_4655_6_12
Type: CAZyme
Location: 7712 - 8647 (-)
Gene ID: HRGMv2_4655_6_13
Type: pfam
Location: 8745 - 9668 (-)
Gene ID: HRGMv2_4655_6_14
Type: pfam
Location: 9761 - 10216 (-)
Gene ID: HRGMv2_4655_6_15
Type: CAZyme
Location: 10232 - 11014 (-)
Gene ID: HRGMv2_4655_6_16
Type: pfam
Location: 10992 - 12185 (-)
Gene ID: HRGMv2_4655_6_17
Type:
Location: 12190 - 13440 (-)
Gene ID: HRGMv2_4655_6_18
Type: CAZyme
Location: 13449 - 15764 (-)
Gene ID: HRGMv2_4655_6_19
Type: STP
Location: 15766 - 18216 (-)
Gene ID: HRGMv2_4655_6_20
Type: TC
Location: 18309 - 18956 (-)
Gene ID: HRGMv2_4655_6_21
Type:
Location: 18959 - 19252 (-)
Gene ID: HRGMv2_4655_6_22
Type: TC
Location: 19330 - 20112 (-)
Gene ID: HRGMv2_4655_6_23
Type: TC
Location: 20109 - 20852 (-)
Gene ID: HRGMv2_4655_6_24
Type: pfam
Location: 20910 - 22244 (-)
Gene ID: HRGMv2_4655_6_25
Type: pfam
Location: 22257 - 23339 (-)
Gene ID: HRGMv2_4655_6_26
Type: CAZyme
Location: 23351 - 24058 (-)
Gene ID: HRGMv2_4655_6_27
Type: pfam
Location: 24074 - 25399 (-)
Gene ID: HRGMv2_4655_6_28
Type: CAZyme
Location: 25418 - 26359 (-)
Gene ID: HRGMv2_4655_6_29
Type: CAZyme
Location: 26352 - 27302 (-)
Gene ID: HRGMv2_4655_6_30
Type: pfam
Location: 27299 - 27796 (-)
Gene ID: HRGMv2_4655_6_31
Type: CAZyme
Location: 27799 - 28716 (-)
Gene ID: HRGMv2_4655_6_32
Type: CAZyme
Location: 28716 - 31025 (-)
Gene ID: HRGMv2_4655_6_33
Type: pfam
Location: 31100 - 32104 (-)
Gene ID: HRGMv2_4655_6_34
Type: CAZyme
Location: 32118 - 33002 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_I
→
Class
Bacilli_A
→
Order
RF39
→
Family
UBA660
→
Genus
CAJMSU01
→
Species
CAJMSU01 sp905216155

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4655_6_12 vegan > omnivore 2.74784 0.03430

🧭 Explore Read Mapping of CGC

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