Cluster: HRGMv2_4652_CGC6
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4652
- CGC Family ID: CGCFAM_01714
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4652_2 | HRGMv2_4652_2_29 | 31442 | 33478 | + | GT5 |
| TC | HRGMv2_4652_2 | HRGMv2_4652_2_30 | 33570 | 35351 | - | 3.D.1.3.1 |
| TC | HRGMv2_4652_2 | HRGMv2_4652_2_31 | 35354 | 37048 | - | 3.D.1.5.1 |
Gene ID: HRGMv2_4652_2_29
Type: CAZyme
Location: 31442 - 33478 (+)
Type: CAZyme
Location: 31442 - 33478 (+)
Gene ID: HRGMv2_4652_2_30
Type: TC
Location: 33570 - 35351 (-)
Type: TC
Location: 33570 - 35351 (-)
Gene ID: HRGMv2_4652_2_31
Type: TC
Location: 35354 - 37048 (-)
Type: TC
Location: 35354 - 37048 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-239
Genus
CAZU01
Species
CAZU01 sp934255405
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.