Cluster: HRGMv2_4652_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4652
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4652_1 | HRGMv2_4652_1_178 | 185332 | 186279 | + | GT2 |
| CAZyme | HRGMv2_4652_1 | HRGMv2_4652_1_179 | 186279 | 188228 | + | GT8 |
| CAZyme | HRGMv2_4652_1 | HRGMv2_4652_1_180 | 188230 | 189735 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_4652_1 | HRGMv2_4652_1_181 | 189784 | 190002 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_4652_1 | HRGMv2_4652_1_182 | 190082 | 190906 | - | Rotamase | Rotamase_2 | Rotamase_3 |
| TC | HRGMv2_4652_1 | HRGMv2_4652_1_183 | 191075 | 193798 | + | 3.A.5.1.1 |
Gene ID: HRGMv2_4652_1_178
Type: CAZyme
Location: 185332 - 186279 (+)
Type: CAZyme
Location: 185332 - 186279 (+)
Gene ID: HRGMv2_4652_1_179
Type: CAZyme
Location: 186279 - 188228 (+)
Type: CAZyme
Location: 186279 - 188228 (+)
Gene ID: HRGMv2_4652_1_180
Type: CAZyme
Location: 188230 - 189735 (+)
Type: CAZyme
Location: 188230 - 189735 (+)
Gene ID: HRGMv2_4652_1_181
Type:
Location: 189784 - 190002 (+)
Type:
Location: 189784 - 190002 (+)
Gene ID: HRGMv2_4652_1_182
Type: pfam
Location: 190082 - 190906 (-)
Type: pfam
Location: 190082 - 190906 (-)
Gene ID: HRGMv2_4652_1_183
Type: TC
Location: 191075 - 193798 (+)
Type: TC
Location: 191075 - 193798 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-239
Genus
CAZU01
Species
CAZU01 sp934255405
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.