Cluster: HRGMv2_4652_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4652
- CGC Family ID: CGCFAM_02651
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4652_1 | HRGMv2_4652_1_41 | 41609 | 43801 | + | CBM48 | GH13_9 |
| CAZyme | HRGMv2_4652_1 | HRGMv2_4652_1_42 | 43815 | 45893 | + | GH13_11 |
| CAZyme | HRGMv2_4652_1 | HRGMv2_4652_1_43 | 45905 | 48043 | + | GH77 |
| pfam | HRGMv2_4652_1 | HRGMv2_4652_1_44 | 48015 | 48674 | + | Hydrolase | HAD_2 |
| STP | HRGMv2_4652_1 | HRGMv2_4652_1_45 | 48974 | 49594 | + | TetR_N |
| TC | HRGMv2_4652_1 | HRGMv2_4652_1_46 | 49596 | 50759 | + | 2.A.6.2.47 |
| TC | HRGMv2_4652_1 | HRGMv2_4652_1_47 | 50763 | 53876 | + | 2.A.6.2.15 |
Gene ID: HRGMv2_4652_1_41
Type: CAZyme
Location: 41609 - 43801 (+)
Type: CAZyme
Location: 41609 - 43801 (+)
Gene ID: HRGMv2_4652_1_42
Type: CAZyme
Location: 43815 - 45893 (+)
Type: CAZyme
Location: 43815 - 45893 (+)
Gene ID: HRGMv2_4652_1_43
Type: CAZyme
Location: 45905 - 48043 (+)
Type: CAZyme
Location: 45905 - 48043 (+)
Gene ID: HRGMv2_4652_1_44
Type: pfam
Location: 48015 - 48674 (+)
Type: pfam
Location: 48015 - 48674 (+)
Gene ID: HRGMv2_4652_1_45
Type: STP
Location: 48974 - 49594 (+)
Type: STP
Location: 48974 - 49594 (+)
Gene ID: HRGMv2_4652_1_46
Type: TC
Location: 49596 - 50759 (+)
Type: TC
Location: 49596 - 50759 (+)
Gene ID: HRGMv2_4652_1_47
Type: TC
Location: 50763 - 53876 (+)
Type: TC
Location: 50763 - 53876 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-239
Genus
CAZU01
Species
CAZU01 sp934255405
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.