Cluster: HRGMv2_4652_CGC11
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4652
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4652_9 | HRGMv2_4652_9_42 | 42780 | 43571 | + | 1.A.30.1.3 |
| TC | HRGMv2_4652_9 | HRGMv2_4652_9_43 | 43584 | 44261 | + | 1.A.30.1.4 |
| TC | HRGMv2_4652_9 | HRGMv2_4652_9_44 | 44282 | 45241 | + | 2.A.109.1.2 |
| CAZyme | HRGMv2_4652_9 | HRGMv2_4652_9_45 | 45356 | 46510 | + | CE9 |
Gene ID: HRGMv2_4652_9_42
Type: TC
Location: 42780 - 43571 (+)
Type: TC
Location: 42780 - 43571 (+)
Gene ID: HRGMv2_4652_9_43
Type: TC
Location: 43584 - 44261 (+)
Type: TC
Location: 43584 - 44261 (+)
Gene ID: HRGMv2_4652_9_44
Type: TC
Location: 44282 - 45241 (+)
Type: TC
Location: 44282 - 45241 (+)
Gene ID: HRGMv2_4652_9_45
Type: CAZyme
Location: 45356 - 46510 (+)
Type: CAZyme
Location: 45356 - 46510 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-239
Genus
CAZU01
Species
CAZU01 sp934255405
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.