Cluster: HRGMv2_4652_CGC1
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4652
- CGC Family ID: CGCFAM_05860
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4652_1 | HRGMv2_4652_1_31 | 29946 | 31103 | - | GT4 |
| pfam | HRGMv2_4652_1 | HRGMv2_4652_1_32 | 31265 | 32395 | + | HlyD_3 | Biotin_lipoyl_2 | HlyD_D23 |
| TC | HRGMv2_4652_1 | HRGMv2_4652_1_33 | 32395 | 35532 | + | 2.A.6.2.44 |
| TC | HRGMv2_4652_1 | HRGMv2_4652_1_34 | 35522 | 36955 | + | 2.A.6.2.25 |
Gene ID: HRGMv2_4652_1_31
Type: CAZyme
Location: 29946 - 31103 (-)
Type: CAZyme
Location: 29946 - 31103 (-)
Gene ID: HRGMv2_4652_1_32
Type: pfam
Location: 31265 - 32395 (+)
Type: pfam
Location: 31265 - 32395 (+)
Gene ID: HRGMv2_4652_1_33
Type: TC
Location: 32395 - 35532 (+)
Type: TC
Location: 32395 - 35532 (+)
Gene ID: HRGMv2_4652_1_34
Type: TC
Location: 35522 - 36955 (+)
Type: TC
Location: 35522 - 36955 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-239
Genus
CAZU01
Species
CAZU01 sp934255405
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.