dbCAN Logo

Cluster: HRGMv2_4642_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4642_14 HRGMv2_4642_14_6 3406 4734 - 2.A.66.1.28
pfam HRGMv2_4642_14 HRGMv2_4642_14_7 4792 5931 + Ubie_methyltran | PrmA | Methyltransf_11 | Methyltransf_12 | Methyltransf_16 | TPR_16 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31
pfam HRGMv2_4642_14 HRGMv2_4642_14_8 6129 6338 - DUF2934
CAZyme HRGMv2_4642_14 HRGMv2_4642_14_9 6523 8775 + CBM48 | GH13_9
CAZyme HRGMv2_4642_14 HRGMv2_4642_14_10 8785 10863 + GH13_11
CAZyme HRGMv2_4642_14 HRGMv2_4642_14_11 10879 13008 + GH77
pfam HRGMv2_4642_14 HRGMv2_4642_14_12 13001 13636 + Hydrolase | HAD_2
STP HRGMv2_4642_14 HRGMv2_4642_14_13 13735 14352 + TetR_N
TC HRGMv2_4642_14 HRGMv2_4642_14_14 14354 15511 + 2.A.6.2.44
TC HRGMv2_4642_14 HRGMv2_4642_14_15 15514 18627 + 2.A.6.2.15
Gene ID: HRGMv2_4642_14_6
Type: TC
Location: 3406 - 4734 (-)
Gene ID: HRGMv2_4642_14_7
Type: pfam
Location: 4792 - 5931 (+)
Gene ID: HRGMv2_4642_14_8
Type: pfam
Location: 6129 - 6338 (-)
Gene ID: HRGMv2_4642_14_9
Type: CAZyme
Location: 6523 - 8775 (+)
Gene ID: HRGMv2_4642_14_10
Type: CAZyme
Location: 8785 - 10863 (+)
Gene ID: HRGMv2_4642_14_11
Type: CAZyme
Location: 10879 - 13008 (+)
Gene ID: HRGMv2_4642_14_12
Type: pfam
Location: 13001 - 13636 (+)
Gene ID: HRGMv2_4642_14_13
Type: STP
Location: 13735 - 14352 (+)
Gene ID: HRGMv2_4642_14_14
Type: TC
Location: 14354 - 15511 (+)
Gene ID: HRGMv2_4642_14_15
Type: TC
Location: 15514 - 18627 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Pseudomonadota
→
Class
Alphaproteobacteria
→
Order
RF32
→
Family
CAG-239
→
Genus
CAZU01
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List