Cluster: HRGMv2_4642_CGC7
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_4642
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4642_11 | HRGMv2_4642_11_3 | 1379 | 2536 | - | CE9 |
| TC | HRGMv2_4642_11 | HRGMv2_4642_11_4 | 2553 | 3218 | - | 1.A.30.1.4 |
| TC | HRGMv2_4642_11 | HRGMv2_4642_11_5 | 3245 | 4018 | - | 1.A.30.1.3 |
| NULL(UNKNOWN) | HRGMv2_4642_11 | HRGMv2_4642_11_6 | 4143 | 4616 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_4642_11 | HRGMv2_4642_11_7 | 4705 | 4818 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4642_11 | HRGMv2_4642_11_8 | 4975 | 5946 | + | GT2 |
| STP | HRGMv2_4642_11 | HRGMv2_4642_11_9 | 5943 | 6611 | - | PIG-L |
| CAZyme | HRGMv2_4642_11 | HRGMv2_4642_11_10 | 6624 | 7553 | - | GT32 |
| CAZyme | HRGMv2_4642_11 | HRGMv2_4642_11_11 | 7555 | 8688 | - | GT4 |
| NULL(UNKNOWN) | HRGMv2_4642_11 | HRGMv2_4642_11_12 | 8810 | 9667 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_4642_11 | HRGMv2_4642_11_13 | 9994 | 10443 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4642_11 | HRGMv2_4642_11_14 | 10440 | 11009 | - | GH108 |
Gene ID: HRGMv2_4642_11_3
Type: CAZyme
Location: 1379 - 2536 (-)
Type: CAZyme
Location: 1379 - 2536 (-)
Gene ID: HRGMv2_4642_11_4
Type: TC
Location: 2553 - 3218 (-)
Type: TC
Location: 2553 - 3218 (-)
Gene ID: HRGMv2_4642_11_5
Type: TC
Location: 3245 - 4018 (-)
Type: TC
Location: 3245 - 4018 (-)
Gene ID: HRGMv2_4642_11_6
Type:
Location: 4143 - 4616 (-)
Type:
Location: 4143 - 4616 (-)
Gene ID: HRGMv2_4642_11_7
Type:
Location: 4705 - 4818 (+)
Type:
Location: 4705 - 4818 (+)
Gene ID: HRGMv2_4642_11_8
Type: CAZyme
Location: 4975 - 5946 (+)
Type: CAZyme
Location: 4975 - 5946 (+)
Gene ID: HRGMv2_4642_11_9
Type: STP
Location: 5943 - 6611 (-)
Type: STP
Location: 5943 - 6611 (-)
Gene ID: HRGMv2_4642_11_10
Type: CAZyme
Location: 6624 - 7553 (-)
Type: CAZyme
Location: 6624 - 7553 (-)
Gene ID: HRGMv2_4642_11_11
Type: CAZyme
Location: 7555 - 8688 (-)
Type: CAZyme
Location: 7555 - 8688 (-)
Gene ID: HRGMv2_4642_11_12
Type:
Location: 8810 - 9667 (-)
Type:
Location: 8810 - 9667 (-)
Gene ID: HRGMv2_4642_11_13
Type:
Location: 9994 - 10443 (+)
Type:
Location: 9994 - 10443 (+)
Gene ID: HRGMv2_4642_11_14
Type: CAZyme
Location: 10440 - 11009 (-)
Type: CAZyme
Location: 10440 - 11009 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-239
Genus
CAZU01
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.