Cluster: HRGMv2_4642_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4642
- CGC Family ID: CGCFAM_07617
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4642_5 | HRGMv2_4642_5_24 | 24621 | 25619 | + | 9.B.8.2.2 |
| NULL(UNKNOWN) | HRGMv2_4642_5 | HRGMv2_4642_5_25 | 25612 | 26010 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_4642_5 | HRGMv2_4642_5_26 | 26010 | 26921 | + | HMUDK_hel |
| CAZyme | HRGMv2_4642_5 | HRGMv2_4642_5_27 | 26991 | 28265 | + | GH103 |
Gene ID: HRGMv2_4642_5_24
Type: TC
Location: 24621 - 25619 (+)
Type: TC
Location: 24621 - 25619 (+)
Gene ID: HRGMv2_4642_5_25
Type:
Location: 25612 - 26010 (+)
Type:
Location: 25612 - 26010 (+)
Gene ID: HRGMv2_4642_5_26
Type: pfam
Location: 26010 - 26921 (+)
Type: pfam
Location: 26010 - 26921 (+)
Gene ID: HRGMv2_4642_5_27
Type: CAZyme
Location: 26991 - 28265 (+)
Type: CAZyme
Location: 26991 - 28265 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-239
Genus
CAZU01
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.