Cluster: HRGMv2_4642_CGC14
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4642
- CGC Family ID: CGCFAM_06287
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4642_30 | HRGMv2_4642_30_8 | 6414 | 7379 | + | GT2 |
| pfam | HRGMv2_4642_30 | HRGMv2_4642_30_9 | 7376 | 7852 | - | dCMP_cyt_deam_1 | MafB19-deam |
| pfam | HRGMv2_4642_30 | HRGMv2_4642_30_10 | 7907 | 9832 | - | tRNA-synt_2b | TGS | HGTP_anticodon | tRNA_SAD |
| CAZyme | HRGMv2_4642_30 | HRGMv2_4642_30_11 | 9852 | 11000 | - | GT4 |
| TC | HRGMv2_4642_30 | HRGMv2_4642_30_12 | 11281 | 12543 | - | 1.B.9.1.4 |
Gene ID: HRGMv2_4642_30_8
Type: CAZyme
Location: 6414 - 7379 (+)
Type: CAZyme
Location: 6414 - 7379 (+)
Gene ID: HRGMv2_4642_30_9
Type: pfam
Location: 7376 - 7852 (-)
Type: pfam
Location: 7376 - 7852 (-)
Gene ID: HRGMv2_4642_30_10
Type: pfam
Location: 7907 - 9832 (-)
Type: pfam
Location: 7907 - 9832 (-)
Gene ID: HRGMv2_4642_30_11
Type: CAZyme
Location: 9852 - 11000 (-)
Type: CAZyme
Location: 9852 - 11000 (-)
Gene ID: HRGMv2_4642_30_12
Type: TC
Location: 11281 - 12543 (-)
Type: TC
Location: 11281 - 12543 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-239
Genus
CAZU01
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.