Cluster: HRGMv2_4642_CGC13
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4642
- CGC Family ID: CGCFAM_05380
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4642_23 | HRGMv2_4642_23_8 | 5125 | 8202 | - | 2.A.6.2.35 |
| TC | HRGMv2_4642_23 | HRGMv2_4642_23_9 | 8199 | 9299 | - | 2.A.6.2.35 |
| TC | HRGMv2_4642_23 | HRGMv2_4642_23_10 | 9687 | 11099 | + | 1.A.34.1.3 |
| NULL(UNKNOWN) | HRGMv2_4642_23 | HRGMv2_4642_23_11 | 11103 | 11333 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_4642_23 | HRGMv2_4642_23_12 | 11427 | 11570 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4642_23 | HRGMv2_4642_23_13 | 11564 | 12034 | - | GH24 |
Gene ID: HRGMv2_4642_23_8
Type: TC
Location: 5125 - 8202 (-)
Type: TC
Location: 5125 - 8202 (-)
Gene ID: HRGMv2_4642_23_9
Type: TC
Location: 8199 - 9299 (-)
Type: TC
Location: 8199 - 9299 (-)
Gene ID: HRGMv2_4642_23_10
Type: TC
Location: 9687 - 11099 (+)
Type: TC
Location: 9687 - 11099 (+)
Gene ID: HRGMv2_4642_23_11
Type:
Location: 11103 - 11333 (-)
Type:
Location: 11103 - 11333 (-)
Gene ID: HRGMv2_4642_23_12
Type:
Location: 11427 - 11570 (-)
Type:
Location: 11427 - 11570 (-)
Gene ID: HRGMv2_4642_23_13
Type: CAZyme
Location: 11564 - 12034 (-)
Type: CAZyme
Location: 11564 - 12034 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-239
Genus
CAZU01
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.