Cluster: HRGMv2_4642_CGC12
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4642
- CGC Family ID: CGCFAM_02462
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4642_22 | HRGMv2_4642_22_9 | 10185 | 11873 | + | GT2 |
| CAZyme | HRGMv2_4642_22 | HRGMv2_4642_22_10 | 11870 | 12496 | + | GT2 |
| STP | HRGMv2_4642_22 | HRGMv2_4642_22_11 | 12807 | 14351 | + | PIG-L |
| STP | HRGMv2_4642_22 | HRGMv2_4642_22_12 | 14370 | 16679 | + | Fer4 |
| TC | HRGMv2_4642_22 | HRGMv2_4642_22_13 | 16795 | 17808 | + | 2.A.1.3.45 |
Gene ID: HRGMv2_4642_22_9
Type: CAZyme
Location: 10185 - 11873 (+)
Type: CAZyme
Location: 10185 - 11873 (+)
Gene ID: HRGMv2_4642_22_10
Type: CAZyme
Location: 11870 - 12496 (+)
Type: CAZyme
Location: 11870 - 12496 (+)
Gene ID: HRGMv2_4642_22_11
Type: STP
Location: 12807 - 14351 (+)
Type: STP
Location: 12807 - 14351 (+)
Gene ID: HRGMv2_4642_22_12
Type: STP
Location: 14370 - 16679 (+)
Type: STP
Location: 14370 - 16679 (+)
Gene ID: HRGMv2_4642_22_13
Type: TC
Location: 16795 - 17808 (+)
Type: TC
Location: 16795 - 17808 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-239
Genus
CAZU01
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.