Cluster: HRGMv2_4640_CGC6
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4640
- CGC Family ID: CGCFAM_01600
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4640_33 | HRGMv2_4640_33_4 | 3226 | 4683 | + | 2.A.3.2.7 |
| pfam | HRGMv2_4640_33 | HRGMv2_4640_33_5 | 4754 | 5656 | - | adh_short | KR | adh_short_C2 | SDR |
| NULL(UNKNOWN) | HRGMv2_4640_33 | HRGMv2_4640_33_6 | 5881 | 6675 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4640_33 | HRGMv2_4640_33_7 | 6816 | 7679 | + | GT82 |
| TC | HRGMv2_4640_33 | HRGMv2_4640_33_8 | 7853 | 10354 | - | 3.A.9.1.2 |
Gene ID: HRGMv2_4640_33_4
Type: TC
Location: 3226 - 4683 (+)
Type: TC
Location: 3226 - 4683 (+)
Gene ID: HRGMv2_4640_33_5
Type: pfam
Location: 4754 - 5656 (-)
Type: pfam
Location: 4754 - 5656 (-)
Gene ID: HRGMv2_4640_33_6
Type:
Location: 5881 - 6675 (+)
Type:
Location: 5881 - 6675 (+)
Gene ID: HRGMv2_4640_33_7
Type: CAZyme
Location: 6816 - 7679 (+)
Type: CAZyme
Location: 6816 - 7679 (+)
Gene ID: HRGMv2_4640_33_8
Type: TC
Location: 7853 - 10354 (-)
Type: TC
Location: 7853 - 10354 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
UBA3637
Genus
UBA7488
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.