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Cluster: HRGMv2_4629_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4629_7 HRGMv2_4629_7_61 57768 59642 - 9.B.18.2.1
pfam HRGMv2_4629_7 HRGMv2_4629_7_62 59777 60304 - PglD_N
TC HRGMv2_4629_7 HRGMv2_4629_7_63 60297 61310 - 9.B.146.1.2
pfam HRGMv2_4629_7 HRGMv2_4629_7_64 61314 62273 - 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | NAD_binding_10 | GDP_Man_Dehyd
CAZyme HRGMv2_4629_7 HRGMv2_4629_7_65 62275 63468 - GT4
pfam HRGMv2_4629_7 HRGMv2_4629_7_66 63480 64610 - Epimerase_2 | LpxB
pfam HRGMv2_4629_7 HRGMv2_4629_7_67 64623 65732 - Epimerase | Polysacc_synt_2 | Polysacc_synt_C
TC HRGMv2_4629_7 HRGMv2_4629_7_68 65735 66769 - 9.B.18.2.1
CAZyme HRGMv2_4629_7 HRGMv2_4629_7_69 66762 67889 - GT4
Gene ID: HRGMv2_4629_7_61
Type: TC
Location: 57768 - 59642 (-)
Gene ID: HRGMv2_4629_7_62
Type: pfam
Location: 59777 - 60304 (-)
Gene ID: HRGMv2_4629_7_63
Type: TC
Location: 60297 - 61310 (-)
Gene ID: HRGMv2_4629_7_64
Type: pfam
Location: 61314 - 62273 (-)
Gene ID: HRGMv2_4629_7_65
Type: CAZyme
Location: 62275 - 63468 (-)
Gene ID: HRGMv2_4629_7_66
Type: pfam
Location: 63480 - 64610 (-)
Gene ID: HRGMv2_4629_7_67
Type: pfam
Location: 64623 - 65732 (-)
Gene ID: HRGMv2_4629_7_68
Type: TC
Location: 65735 - 66769 (-)
Gene ID: HRGMv2_4629_7_69
Type: CAZyme
Location: 66762 - 67889 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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