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Cluster: HRGMv2_4629_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4629_35 HRGMv2_4629_35_23 21324 22085 - GH25
NULL(UNKNOWN) HRGMv2_4629_35 HRGMv2_4629_35_24 22097 23065 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4629_35 HRGMv2_4629_35_25 23105 24493 - 2.A.1.3.26
pfam HRGMv2_4629_35 HRGMv2_4629_35_26 24657 26438 + choice_anch_I | choice_anch_I
pfam HRGMv2_4629_35 HRGMv2_4629_35_27 26492 27112 - Lysine_decarbox | LDcluster4
TC HRGMv2_4629_35 HRGMv2_4629_35_28 27440 29029 + 2.A.109.2.3
pfam HRGMv2_4629_35 HRGMv2_4629_35_29 29124 29606 + SEC-C | YchJ_M-like
TC HRGMv2_4629_35 HRGMv2_4629_35_30 29659 30303 + 1.A.62.2.3
pfam HRGMv2_4629_35 HRGMv2_4629_35_31 30401 31039 + Sel1 | Sel1 | Sel1
pfam HRGMv2_4629_35 HRGMv2_4629_35_32 31154 33373 + DNA_topoisoIV | DNA_gyraseA_C | DNA_gyraseA_C
TC HRGMv2_4629_35 HRGMv2_4629_35_33 33530 35209 + 4.C.1.1.4
Gene ID: HRGMv2_4629_35_23
Type: CAZyme
Location: 21324 - 22085 (-)
Gene ID: HRGMv2_4629_35_24
Type:
Location: 22097 - 23065 (-)
Gene ID: HRGMv2_4629_35_25
Type: TC
Location: 23105 - 24493 (-)
Gene ID: HRGMv2_4629_35_26
Type: pfam
Location: 24657 - 26438 (+)
Gene ID: HRGMv2_4629_35_27
Type: pfam
Location: 26492 - 27112 (-)
Gene ID: HRGMv2_4629_35_28
Type: TC
Location: 27440 - 29029 (+)
Gene ID: HRGMv2_4629_35_29
Type: pfam
Location: 29124 - 29606 (+)
Gene ID: HRGMv2_4629_35_30
Type: TC
Location: 29659 - 30303 (+)
Gene ID: HRGMv2_4629_35_31
Type: pfam
Location: 30401 - 31039 (+)
Gene ID: HRGMv2_4629_35_32
Type: pfam
Location: 31154 - 33373 (+)
Gene ID: HRGMv2_4629_35_33
Type: TC
Location: 33530 - 35209 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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