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Cluster: HRGMv2_4629_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4629_31 HRGMv2_4629_31_28 25110 26201 - 3.A.11.1.3
CAZyme HRGMv2_4629_31 HRGMv2_4629_31_29 26252 27406 - CBM50
pfam HRGMv2_4629_31 HRGMv2_4629_31_30 27527 28057 + Pep_deformylase
pfam HRGMv2_4629_31 HRGMv2_4629_31_31 28078 28515 + DUF2946
TC HRGMv2_4629_31 HRGMv2_4629_31_32 28589 30709 + 1.B.14.4.2
NULL(UNKNOWN) HRGMv2_4629_31 HRGMv2_4629_31_33 30756 31517 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4629_31 HRGMv2_4629_31_34 31841 35359 - 2.A.21.9.2
TC HRGMv2_4629_31 HRGMv2_4629_31_35 35519 35851 + 9.B.136.1.1
TC HRGMv2_4629_31 HRGMv2_4629_31_36 35832 37568 + 2.A.21.7.2
pfam HRGMv2_4629_31 HRGMv2_4629_31_37 37628 38836 - MPAB_Lcp_cat
STP HRGMv2_4629_31 HRGMv2_4629_31_38 38922 39518 + TetR_N
TC HRGMv2_4629_31 HRGMv2_4629_31_39 39564 40259 + 1.A.1.28.6
TC HRGMv2_4629_31 HRGMv2_4629_31_40 40410 42386 + 2.A.15.1.9
Gene ID: HRGMv2_4629_31_28
Type: TC
Location: 25110 - 26201 (-)
Gene ID: HRGMv2_4629_31_29
Type: CAZyme
Location: 26252 - 27406 (-)
Gene ID: HRGMv2_4629_31_30
Type: pfam
Location: 27527 - 28057 (+)
Gene ID: HRGMv2_4629_31_31
Type: pfam
Location: 28078 - 28515 (+)
Gene ID: HRGMv2_4629_31_32
Type: TC
Location: 28589 - 30709 (+)
Gene ID: HRGMv2_4629_31_33
Type:
Location: 30756 - 31517 (-)
Gene ID: HRGMv2_4629_31_34
Type: TC
Location: 31841 - 35359 (-)
Gene ID: HRGMv2_4629_31_35
Type: TC
Location: 35519 - 35851 (+)
Gene ID: HRGMv2_4629_31_36
Type: TC
Location: 35832 - 37568 (+)
Gene ID: HRGMv2_4629_31_37
Type: pfam
Location: 37628 - 38836 (-)
Gene ID: HRGMv2_4629_31_38
Type: STP
Location: 38922 - 39518 (+)
Gene ID: HRGMv2_4629_31_39
Type: TC
Location: 39564 - 40259 (+)
Gene ID: HRGMv2_4629_31_40
Type: TC
Location: 40410 - 42386 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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