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Cluster: HRGMv2_4628_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4628_29 HRGMv2_4628_29_4 2773 4857 - 1.B.14.4.1
pfam HRGMv2_4628_29 HRGMv2_4628_29_5 4928 5395 - DUF2946
pfam HRGMv2_4628_29 HRGMv2_4628_29_6 5504 6034 - Pep_deformylase
CAZyme HRGMv2_4628_29 HRGMv2_4628_29_7 6158 7309 + CBM50
TC HRGMv2_4628_29 HRGMv2_4628_29_8 7333 8460 + 3.A.11.1.3
pfam HRGMv2_4628_29 HRGMv2_4628_29_9 8507 9076 + Sua5_yciO_yrdC
TC HRGMv2_4628_29 HRGMv2_4628_29_10 9501 10394 - 2.A.7.3.36
NULL(UNKNOWN) HRGMv2_4628_29 HRGMv2_4628_29_11 10444 10545 + NULL(UNKNOWN)
[View Structural Homologs]
STP HRGMv2_4628_29 HRGMv2_4628_29_12 10537 11181 - TetR_N
TC HRGMv2_4628_29 HRGMv2_4628_29_13 11325 12569 + 2.A.1.2.14
Gene ID: HRGMv2_4628_29_4
Type: TC
Location: 2773 - 4857 (-)
Gene ID: HRGMv2_4628_29_5
Type: pfam
Location: 4928 - 5395 (-)
Gene ID: HRGMv2_4628_29_6
Type: pfam
Location: 5504 - 6034 (-)
Gene ID: HRGMv2_4628_29_7
Type: CAZyme
Location: 6158 - 7309 (+)
Gene ID: HRGMv2_4628_29_8
Type: TC
Location: 7333 - 8460 (+)
Gene ID: HRGMv2_4628_29_9
Type: pfam
Location: 8507 - 9076 (+)
Gene ID: HRGMv2_4628_29_10
Type: TC
Location: 9501 - 10394 (-)
Gene ID: HRGMv2_4628_29_11
Type:
Location: 10444 - 10545 (+)
Gene ID: HRGMv2_4628_29_12
Type: STP
Location: 10537 - 11181 (-)
Gene ID: HRGMv2_4628_29_13
Type: TC
Location: 11325 - 12569 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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