Cluster: HRGMv2_4582_CGC3
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4582
- CGC Family ID: CGCFAM_00085
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4582_10 | HRGMv2_4582_10_8 | 4663 | 5445 | + | 2.A.5.5.2 |
| NULL(UNKNOWN) | HRGMv2_4582_10 | HRGMv2_4582_10_9 | 5507 | 5773 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4582_10 | HRGMv2_4582_10_10 | 5936 | 7477 | + | 2.A.66.4.5 |
| TC | HRGMv2_4582_10 | HRGMv2_4582_10_11 | 7481 | 9313 | + | 9.B.67.1.1 |
| CAZyme | HRGMv2_4582_10 | HRGMv2_4582_10_12 | 9306 | 10412 | + | GT4 |
| pfam | HRGMv2_4582_10 | HRGMv2_4582_10_13 | 10428 | 10925 | + | DUF4330 |
| pfam | HRGMv2_4582_10 | HRGMv2_4582_10_14 | 10922 | 11407 | + | DUF4330 |
| TC | HRGMv2_4582_10 | HRGMv2_4582_10_15 | 11593 | 11856 | + | 8.A.8.1.4 |
Gene ID: HRGMv2_4582_10_8
Type: TC
Location: 4663 - 5445 (+)
Type: TC
Location: 4663 - 5445 (+)
Gene ID: HRGMv2_4582_10_9
Type:
Location: 5507 - 5773 (-)
Type:
Location: 5507 - 5773 (-)
Gene ID: HRGMv2_4582_10_10
Type: TC
Location: 5936 - 7477 (+)
Type: TC
Location: 5936 - 7477 (+)
Gene ID: HRGMv2_4582_10_11
Type: TC
Location: 7481 - 9313 (+)
Type: TC
Location: 7481 - 9313 (+)
Gene ID: HRGMv2_4582_10_12
Type: CAZyme
Location: 9306 - 10412 (+)
Type: CAZyme
Location: 9306 - 10412 (+)
Gene ID: HRGMv2_4582_10_13
Type: pfam
Location: 10428 - 10925 (+)
Type: pfam
Location: 10428 - 10925 (+)
Gene ID: HRGMv2_4582_10_14
Type: pfam
Location: 10922 - 11407 (+)
Type: pfam
Location: 10922 - 11407 (+)
Gene ID: HRGMv2_4582_10_15
Type: TC
Location: 11593 - 11856 (+)
Type: TC
Location: 11593 - 11856 (+)
Taxonomic Lineage
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.