Cluster: HRGMv2_4582_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4582
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4582_3 | HRGMv2_4582_3_10 | 8756 | 10489 | - | GH3 |
| TF | HRGMv2_4582_3 | HRGMv2_4582_3_11 | 11133 | 11345 | + | HTH_3 |
| pfam | HRGMv2_4582_3 | HRGMv2_4582_3_12 | 11365 | 12117 | + | DUF3169 |
| TC | HRGMv2_4582_3 | HRGMv2_4582_3_13 | 12163 | 13539 | - | 2.A.66.1.26 |
| pfam | HRGMv2_4582_3 | HRGMv2_4582_3_14 | 13999 | 15303 | + | ThiC_Rad_SAM |
| TC | HRGMv2_4582_3 | HRGMv2_4582_3_15 | 15364 | 16266 | + | 2.A.115.1.5 |
Gene ID: HRGMv2_4582_3_10
Type: CAZyme
Location: 8756 - 10489 (-)
Type: CAZyme
Location: 8756 - 10489 (-)
Gene ID: HRGMv2_4582_3_11
Type: TF
Location: 11133 - 11345 (+)
Type: TF
Location: 11133 - 11345 (+)
Gene ID: HRGMv2_4582_3_12
Type: pfam
Location: 11365 - 12117 (+)
Type: pfam
Location: 11365 - 12117 (+)
Gene ID: HRGMv2_4582_3_13
Type: TC
Location: 12163 - 13539 (-)
Type: TC
Location: 12163 - 13539 (-)
Gene ID: HRGMv2_4582_3_14
Type: pfam
Location: 13999 - 15303 (+)
Type: pfam
Location: 13999 - 15303 (+)
Gene ID: HRGMv2_4582_3_15
Type: TC
Location: 15364 - 16266 (+)
Type: TC
Location: 15364 - 16266 (+)
Taxonomic Lineage
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4582_3_11 | vegetarian > vegan | 4.13171 | 0.00581 |