Cluster: HRGMv2_4582_CGC1
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4582
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4582_1 | HRGMv2_4582_1_112 | 119330 | 120031 | - | 3.A.1.132.6 |
| TF | HRGMv2_4582_1 | HRGMv2_4582_1_113 | 120032 | 120400 | - | GntR |
| CAZyme | HRGMv2_4582_1 | HRGMv2_4582_1_114 | 120894 | 122174 | + | GT2 |
| pfam | HRGMv2_4582_1 | HRGMv2_4582_1_115 | 122358 | 123134 | + | TMEM164 |
| TF | HRGMv2_4582_1 | HRGMv2_4582_1_116 | 123261 | 123992 | + | GntR |
| TC | HRGMv2_4582_1 | HRGMv2_4582_1_117 | 124428 | 125441 | + | 2.A.56.1.9 |
| pfam | HRGMv2_4582_1 | HRGMv2_4582_1_118 | 125527 | 126003 | + | DctQ |
| TC | HRGMv2_4582_1 | HRGMv2_4582_1_119 | 126005 | 127285 | + | 2.A.56.1.1 |
Gene ID: HRGMv2_4582_1_112
Type: TC
Location: 119330 - 120031 (-)
Type: TC
Location: 119330 - 120031 (-)
Gene ID: HRGMv2_4582_1_113
Type: TF
Location: 120032 - 120400 (-)
Type: TF
Location: 120032 - 120400 (-)
Gene ID: HRGMv2_4582_1_114
Type: CAZyme
Location: 120894 - 122174 (+)
Type: CAZyme
Location: 120894 - 122174 (+)
Gene ID: HRGMv2_4582_1_115
Type: pfam
Location: 122358 - 123134 (+)
Type: pfam
Location: 122358 - 123134 (+)
Gene ID: HRGMv2_4582_1_116
Type: TF
Location: 123261 - 123992 (+)
Type: TF
Location: 123261 - 123992 (+)
Gene ID: HRGMv2_4582_1_117
Type: TC
Location: 124428 - 125441 (+)
Type: TC
Location: 124428 - 125441 (+)
Gene ID: HRGMv2_4582_1_118
Type: pfam
Location: 125527 - 126003 (+)
Type: pfam
Location: 125527 - 126003 (+)
Gene ID: HRGMv2_4582_1_119
Type: TC
Location: 126005 - 127285 (+)
Type: TC
Location: 126005 - 127285 (+)
Taxonomic Lineage
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.