Cluster: HRGMv2_4573_CGC9
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4573
- CGC Family ID: CGCFAM_06635
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4573_33 | HRGMv2_4573_33_9 | 8338 | 9399 | + | GH179 |
| pfam | HRGMv2_4573_33 | HRGMv2_4573_33_10 | 9906 | 11234 | + | Glyco_trans_1_2 |
| CAZyme | HRGMv2_4573_33 | HRGMv2_4573_33_11 | 11234 | 12466 | + | GT4 |
| TC | HRGMv2_4573_33 | HRGMv2_4573_33_12 | 12468 | 13766 | + | 2.A.66.2.9 |
Gene ID: HRGMv2_4573_33_9
Type: CAZyme
Location: 8338 - 9399 (+)
Type: CAZyme
Location: 8338 - 9399 (+)
Gene ID: HRGMv2_4573_33_10
Type: pfam
Location: 9906 - 11234 (+)
Type: pfam
Location: 9906 - 11234 (+)
Gene ID: HRGMv2_4573_33_11
Type: CAZyme
Location: 11234 - 12466 (+)
Type: CAZyme
Location: 11234 - 12466 (+)
Gene ID: HRGMv2_4573_33_12
Type: TC
Location: 12468 - 13766 (+)
Type: TC
Location: 12468 - 13766 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
CAG-272
Genus
UMGS1865
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4573_33_9 | vegan > omnivore | 1.30403 | 0.02248 |
| HRGMv2_4573_33_11 | vegan > omnivore | 1.78627 | 0.02248 |