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Cluster: HRGMv2_4573_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4573_25 HRGMv2_4573_25_2 881 2242 + 3.D.6.1.2
TC HRGMv2_4573_25 HRGMv2_4573_25_3 2239 3252 + 3.D.6.1.2
TC HRGMv2_4573_25 HRGMv2_4573_25_4 3239 3793 + 3.D.6.1.3
TC HRGMv2_4573_25 HRGMv2_4573_25_5 3790 4434 + 3.D.6.1.2
TC HRGMv2_4573_25 HRGMv2_4573_25_6 4431 5015 + 3.D.6.1.2
TC HRGMv2_4573_25 HRGMv2_4573_25_7 5029 5820 + 3.D.6.1.3
NULL(UNKNOWN) HRGMv2_4573_25 HRGMv2_4573_25_8 5901 5996 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_4573_25 HRGMv2_4573_25_9 6362 6631 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4573_25 HRGMv2_4573_25_10 6757 7908 + 3.A.1.4.10
TC HRGMv2_4573_25 HRGMv2_4573_25_11 7974 8846 + 3.A.1.4.10
TC HRGMv2_4573_25 HRGMv2_4573_25_12 8843 10030 + 3.A.1.4.8
TC HRGMv2_4573_25 HRGMv2_4573_25_13 10030 10800 + 3.A.1.4.10
TC HRGMv2_4573_25 HRGMv2_4573_25_14 10816 11526 + 3.A.1.4.10
TF HRGMv2_4573_25 HRGMv2_4573_25_15 11772 11951 + Arc
TC HRGMv2_4573_25 HRGMv2_4573_25_16 12013 12615 - 2.A.88.3.2
NULL(UNKNOWN) HRGMv2_4573_25 HRGMv2_4573_25_17 13095 14459 - NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_4573_25 HRGMv2_4573_25_18 14456 15379 - HTH_AraC
TC HRGMv2_4573_25 HRGMv2_4573_25_19 16000 18624 - 4.A.2.1.17
pfam HRGMv2_4573_25 HRGMv2_4573_25_20 18961 19599 + Pept_tRNA_hydro
pfam HRGMv2_4573_25 HRGMv2_4573_25_21 20333 23899 + DEAD | Helicase_C | CarD_TRCF_RID | TRCF | ResIII | UvrB_inter
CAZyme HRGMv2_4573_25 HRGMv2_4573_25_22 24297 25604 - GH180
NULL(UNKNOWN) HRGMv2_4573_25 HRGMv2_4573_25_23 25765 25944 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_4573_25 HRGMv2_4573_25_24 26485 27453 + ABC_sub_bind
TC HRGMv2_4573_25 HRGMv2_4573_25_25 27477 28388 + 3.A.1.34.1
TC HRGMv2_4573_25 HRGMv2_4573_25_26 28381 29157 + 3.A.1.34.1
Gene ID: HRGMv2_4573_25_2
Type: TC
Location: 881 - 2242 (+)
Gene ID: HRGMv2_4573_25_3
Type: TC
Location: 2239 - 3252 (+)
Gene ID: HRGMv2_4573_25_4
Type: TC
Location: 3239 - 3793 (+)
Gene ID: HRGMv2_4573_25_5
Type: TC
Location: 3790 - 4434 (+)
Gene ID: HRGMv2_4573_25_6
Type: TC
Location: 4431 - 5015 (+)
Gene ID: HRGMv2_4573_25_7
Type: TC
Location: 5029 - 5820 (+)
Gene ID: HRGMv2_4573_25_8
Type:
Location: 5901 - 5996 (-)
Gene ID: HRGMv2_4573_25_9
Type:
Location: 6362 - 6631 (+)
Gene ID: HRGMv2_4573_25_10
Type: TC
Location: 6757 - 7908 (+)
Gene ID: HRGMv2_4573_25_11
Type: TC
Location: 7974 - 8846 (+)
Gene ID: HRGMv2_4573_25_12
Type: TC
Location: 8843 - 10030 (+)
Gene ID: HRGMv2_4573_25_13
Type: TC
Location: 10030 - 10800 (+)
Gene ID: HRGMv2_4573_25_14
Type: TC
Location: 10816 - 11526 (+)
Gene ID: HRGMv2_4573_25_15
Type: TF
Location: 11772 - 11951 (+)
Gene ID: HRGMv2_4573_25_16
Type: TC
Location: 12013 - 12615 (-)
Gene ID: HRGMv2_4573_25_17
Type:
Location: 13095 - 14459 (-)
Gene ID: HRGMv2_4573_25_18
Type: TF
Location: 14456 - 15379 (-)
Gene ID: HRGMv2_4573_25_19
Type: TC
Location: 16000 - 18624 (-)
Gene ID: HRGMv2_4573_25_20
Type: pfam
Location: 18961 - 19599 (+)
Gene ID: HRGMv2_4573_25_21
Type: pfam
Location: 20333 - 23899 (+)
Gene ID: HRGMv2_4573_25_22
Type: CAZyme
Location: 24297 - 25604 (-)
Gene ID: HRGMv2_4573_25_23
Type:
Location: 25765 - 25944 (-)
Gene ID: HRGMv2_4573_25_24
Type: pfam
Location: 26485 - 27453 (+)
Gene ID: HRGMv2_4573_25_25
Type: TC
Location: 27477 - 28388 (+)
Gene ID: HRGMv2_4573_25_26
Type: TC
Location: 28381 - 29157 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
CAG-272
→
Genus
UMGS1865
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4573_25_2 vegan > omnivore 1.99164 0.02248
HRGMv2_4573_25_4 vegan > omnivore 1.80553 0.02248
HRGMv2_4573_25_5 vegan > omnivore 1.57066 0.02248
HRGMv2_4573_25_6 vegan > omnivore 1.38462 0.02248
HRGMv2_4573_25_8 vegan > omnivore 1.66747 0.02248
HRGMv2_4573_25_11 vegan > omnivore 1.83549 0.02248
HRGMv2_4573_25_12 vegan > omnivore 1.36293 0.02248
HRGMv2_4573_25_15 vegan > omnivore 3.05729 0.02248
HRGMv2_4573_25_16 vegan > omnivore 1.62172 0.02248
HRGMv2_4573_25_17 vegan > omnivore 2.18073 0.02248
HRGMv2_4573_25_18 vegan > omnivore 1.87259 0.02248
HRGMv2_4573_25_20 vegan > omnivore 1.76443 0.02248

🧭 Explore Read Mapping of CGC

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