dbCAN HGM

Cluster: HRGMv2_4573_CGC4

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	HRGMv2_4573_17	HRGMv2_4573_17_4	3647	6415	+	3.A.5.1.3
NULL(UNKNOWN)	HRGMv2_4573_17	HRGMv2_4573_17_5	6441	7166	+	NULL(UNKNOWN) [View Structural Homologs]
NULL(UNKNOWN)	HRGMv2_4573_17	HRGMv2_4573_17_6	7166	8563	+	NULL(UNKNOWN) [View Structural Homologs]
TC	HRGMv2_4573_17	HRGMv2_4573_17_7	8613	10877	+	3.A.1.135.5
pfam	HRGMv2_4573_17	HRGMv2_4573_17_8	10929	11525	+	DUF1854
TC	HRGMv2_4573_17	HRGMv2_4573_17_9	11535	13727	+	3.A.1.106.3
CAZyme	HRGMv2_4573_17	HRGMv2_4573_17_10	14754	16829	+	GH78

Gene ID: HRGMv2_4573_17_4
Type: TC
Location: 3647 - 6415 (+)

Gene ID: HRGMv2_4573_17_5
Type:
Location: 6441 - 7166 (+)

Gene ID: HRGMv2_4573_17_6
Type:
Location: 7166 - 8563 (+)

Gene ID: HRGMv2_4573_17_7
Type: TC
Location: 8613 - 10877 (+)

Gene ID: HRGMv2_4573_17_8
Type: pfam
Location: 10929 - 11525 (+)

Gene ID: HRGMv2_4573_17_9
Type: TC
Location: 11535 - 13727 (+)

Gene ID: HRGMv2_4573_17_10
Type: CAZyme
Location: 14754 - 16829 (+)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_4573_17_7	vegan > omnivore	1.74632	0.02248
HRGMv2_4573_17_8	vegan > omnivore	1.99230	0.02248
HRGMv2_4573_17_9	vegan > omnivore	1.45428	0.02248
HRGMv2_4573_17_10	vegan > omnivore	1.53133	0.02248