Cluster: HRGMv2_4573_CGC14
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4573
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4573_103 | HRGMv2_4573_103_1 | 84 | 1079 | + | CE2 |
| pfam | HRGMv2_4573_103 | HRGMv2_4573_103_2 | 1090 | 1716 | + | TPK_catalytic | TPK_B1_binding |
| TC | HRGMv2_4573_103 | HRGMv2_4573_103_3 | 2008 | 3117 | + | 3.B.1.1.5 |
Gene ID: HRGMv2_4573_103_1
Type: CAZyme
Location: 84 - 1079 (+)
Type: CAZyme
Location: 84 - 1079 (+)
Gene ID: HRGMv2_4573_103_2
Type: pfam
Location: 1090 - 1716 (+)
Type: pfam
Location: 1090 - 1716 (+)
Gene ID: HRGMv2_4573_103_3
Type: TC
Location: 2008 - 3117 (+)
Type: TC
Location: 2008 - 3117 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
CAG-272
Genus
UMGS1865
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4573_103_2 | vegan > omnivore | 1.23593 | 0.02248 |