Cluster: HRGMv2_4573_CGC11
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4573
- CGC Family ID: CGCFAM_01982
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4573_36 | HRGMv2_4573_36_3 | 4617 | 5753 | - | GT28 |
| pfam | HRGMv2_4573_36 | HRGMv2_4573_36_4 | 5741 | 6250 | - | CrtO |
| TC | HRGMv2_4573_36 | HRGMv2_4573_36_5 | 6838 | 8268 | + | 2.A.50.2.1 |
Gene ID: HRGMv2_4573_36_3
Type: CAZyme
Location: 4617 - 5753 (-)
Type: CAZyme
Location: 4617 - 5753 (-)
Gene ID: HRGMv2_4573_36_4
Type: pfam
Location: 5741 - 6250 (-)
Type: pfam
Location: 5741 - 6250 (-)
Gene ID: HRGMv2_4573_36_5
Type: TC
Location: 6838 - 8268 (+)
Type: TC
Location: 6838 - 8268 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
CAG-272
Genus
UMGS1865
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4573_36_3 | vegan > omnivore | 1.33632 | 0.02248 |
| HRGMv2_4573_36_4 | vegan > omnivore | 1.99041 | 0.02248 |
| HRGMv2_4573_36_5 | vegan > omnivore | 1.47978 | 0.02248 |