Cluster: HRGMv2_4572_CGC29
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4572
- CGC Family ID: CGCFAM_03839
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4572_25 | HRGMv2_4572_25_5 | 3754 | 5469 | + | GH2 |
| CAZyme | HRGMv2_4572_25 | HRGMv2_4572_25_6 | 5484 | 8540 | + | GH2 |
| NULL(UNKNOWN) | HRGMv2_4572_25 | HRGMv2_4572_25_7 | 8794 | 9060 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4572_25 | HRGMv2_4572_25_8 | 10445 | 11014 | + | 2.A.107.1.2 |
| TC | HRGMv2_4572_25 | HRGMv2_4572_25_9 | 11471 | 13228 | + | 2.A.35.2.1 |
Gene ID: HRGMv2_4572_25_5
Type: CAZyme
Location: 3754 - 5469 (+)
Type: CAZyme
Location: 3754 - 5469 (+)
Gene ID: HRGMv2_4572_25_6
Type: CAZyme
Location: 5484 - 8540 (+)
Type: CAZyme
Location: 5484 - 8540 (+)
Gene ID: HRGMv2_4572_25_7
Type:
Location: 8794 - 9060 (-)
Type:
Location: 8794 - 9060 (-)
Gene ID: HRGMv2_4572_25_8
Type: TC
Location: 10445 - 11014 (+)
Type: TC
Location: 10445 - 11014 (+)
Gene ID: HRGMv2_4572_25_9
Type: TC
Location: 11471 - 13228 (+)
Type: TC
Location: 11471 - 13228 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
CAG-488
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4572_25_8 | vegetarian > omnivore | 2.62579 | 0.03116 |
| HRGMv2_4572_25_8 | vegetarian > vegan | 3.60021 | 0.03451 |