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Cluster: HRGMv2_4572_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4572_13 HRGMv2_4572_13_21 18535 19149 + 2.A.115.2.14
TC HRGMv2_4572_13 HRGMv2_4572_13_22 19146 20477 + 2.A.66.1.37
NULL(UNKNOWN) HRGMv2_4572_13 HRGMv2_4572_13_23 20515 21993 - NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_4572_13 HRGMv2_4572_13_24 22098 22322 + HTH_3
TC HRGMv2_4572_13 HRGMv2_4572_13_25 22419 23165 - 3.A.1.3.25
TC HRGMv2_4572_13 HRGMv2_4572_13_26 23155 23823 - 3.A.1.3.25
TC HRGMv2_4572_13 HRGMv2_4572_13_27 23888 24652 - 3.A.1.3.25
CAZyme HRGMv2_4572_13 HRGMv2_4572_13_28 24951 27128 + GH36
pfam HRGMv2_4572_13 HRGMv2_4572_13_29 27133 27654 + RimM | PRC | PRC_RimM
pfam HRGMv2_4572_13 HRGMv2_4572_13_30 27659 28384 + tRNA_m1G_MT
TC HRGMv2_4572_13 HRGMv2_4572_13_31 28587 28850 + 8.A.8.1.6
Gene ID: HRGMv2_4572_13_21
Type: TC
Location: 18535 - 19149 (+)
Gene ID: HRGMv2_4572_13_22
Type: TC
Location: 19146 - 20477 (+)
Gene ID: HRGMv2_4572_13_23
Type:
Location: 20515 - 21993 (-)
Gene ID: HRGMv2_4572_13_24
Type: TF
Location: 22098 - 22322 (+)
Gene ID: HRGMv2_4572_13_25
Type: TC
Location: 22419 - 23165 (-)
Gene ID: HRGMv2_4572_13_26
Type: TC
Location: 23155 - 23823 (-)
Gene ID: HRGMv2_4572_13_27
Type: TC
Location: 23888 - 24652 (-)
Gene ID: HRGMv2_4572_13_28
Type: CAZyme
Location: 24951 - 27128 (+)
Gene ID: HRGMv2_4572_13_29
Type: pfam
Location: 27133 - 27654 (+)
Gene ID: HRGMv2_4572_13_30
Type: pfam
Location: 27659 - 28384 (+)
Gene ID: HRGMv2_4572_13_31
Type: TC
Location: 28587 - 28850 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Acutalibacteraceae
→
Genus
CAG-488
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4572_13_31 vegetarian > omnivore 2.29197 0.03116
HRGMv2_4572_13_31 vegetarian > vegan 5.22033 0.03451

🧭 Explore Read Mapping of CGC

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