Cluster: HRGMv2_4571_CGC6
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4571
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4571_12 | HRGMv2_4571_12_22 | 22237 | 24561 | - | CBM35 | CBM78 | GH26 |
| pfam | HRGMv2_4571_12 | HRGMv2_4571_12_23 | 24851 | 26242 | - | DUF4340 | DUF4340 |
| pfam | HRGMv2_4571_12 | HRGMv2_4571_12_24 | 26242 | 27735 | - | ABC_transp_aux |
| TC | HRGMv2_4571_12 | HRGMv2_4571_12_25 | 27742 | 28473 | - | 3.A.1.132.3 |
| TC | HRGMv2_4571_12 | HRGMv2_4571_12_26 | 28473 | 29501 | - | 3.A.1.132.4 |
| CAZyme | HRGMv2_4571_12 | HRGMv2_4571_12_27 | 30142 | 32685 | + | GH48 |
Gene ID: HRGMv2_4571_12_22
Type: CAZyme
Location: 22237 - 24561 (-)
Type: CAZyme
Location: 22237 - 24561 (-)
Gene ID: HRGMv2_4571_12_23
Type: pfam
Location: 24851 - 26242 (-)
Type: pfam
Location: 24851 - 26242 (-)
Gene ID: HRGMv2_4571_12_24
Type: pfam
Location: 26242 - 27735 (-)
Type: pfam
Location: 26242 - 27735 (-)
Gene ID: HRGMv2_4571_12_25
Type: TC
Location: 27742 - 28473 (-)
Type: TC
Location: 27742 - 28473 (-)
Gene ID: HRGMv2_4571_12_26
Type: TC
Location: 28473 - 29501 (-)
Type: TC
Location: 28473 - 29501 (-)
Gene ID: HRGMv2_4571_12_27
Type: CAZyme
Location: 30142 - 32685 (+)
Type: CAZyme
Location: 30142 - 32685 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus
Species
Ruminococcus sp937880065
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.