Cluster: HRGMv2_4571_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4571
- CGC Family ID: CGCFAM_02510
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4571_6 | HRGMv2_4571_6_29 | 31245 | 34151 | - | CBM22 | CE1 | GH30_8 |
| NULL(UNKNOWN) | HRGMv2_4571_6 | HRGMv2_4571_6_30 | 34338 | 34532 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4571_6 | HRGMv2_4571_6_31 | 34591 | 38442 | - | CBM22 | CBM6 | GH10 | GH43_16 |
| TF | HRGMv2_4571_6 | HRGMv2_4571_6_32 | 38810 | 41026 | + | HTH_AraC |
| TC | HRGMv2_4571_6 | HRGMv2_4571_6_33 | 41041 | 42210 | + | 2.A.4.7.2 |
Gene ID: HRGMv2_4571_6_29
Type: CAZyme
Location: 31245 - 34151 (-)
Type: CAZyme
Location: 31245 - 34151 (-)
Gene ID: HRGMv2_4571_6_30
Type:
Location: 34338 - 34532 (-)
Type:
Location: 34338 - 34532 (-)
Gene ID: HRGMv2_4571_6_31
Type: CAZyme
Location: 34591 - 38442 (-)
Type: CAZyme
Location: 34591 - 38442 (-)
Gene ID: HRGMv2_4571_6_32
Type: TF
Location: 38810 - 41026 (+)
Type: TF
Location: 38810 - 41026 (+)
Gene ID: HRGMv2_4571_6_33
Type: TC
Location: 41041 - 42210 (+)
Type: TC
Location: 41041 - 42210 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus
Species
Ruminococcus sp937880065
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.