Cluster: HRGMv2_4571_CGC14
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4571
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4571_27 | HRGMv2_4571_27_16 | 13103 | 15847 | + | GH3 |
| CAZyme | HRGMv2_4571_27 | HRGMv2_4571_27_17 | 15944 | 16678 | - | CE4 |
| TC | HRGMv2_4571_27 | HRGMv2_4571_27_18 | 16886 | 17605 | + | 3.A.1.149.1 |
| pfam | HRGMv2_4571_27 | HRGMv2_4571_27_19 | 17602 | 18252 | + | ABC2_membrane_5 |
| TF | HRGMv2_4571_27 | HRGMv2_4571_27_20 | 18265 | 18696 | + | HTH_3 | SpoVT_AbrB |
| TC | HRGMv2_4571_27 | HRGMv2_4571_27_21 | 18931 | 20331 | - | 9.B.160.1.10 |
Gene ID: HRGMv2_4571_27_16
Type: CAZyme
Location: 13103 - 15847 (+)
Type: CAZyme
Location: 13103 - 15847 (+)
Gene ID: HRGMv2_4571_27_17
Type: CAZyme
Location: 15944 - 16678 (-)
Type: CAZyme
Location: 15944 - 16678 (-)
Gene ID: HRGMv2_4571_27_18
Type: TC
Location: 16886 - 17605 (+)
Type: TC
Location: 16886 - 17605 (+)
Gene ID: HRGMv2_4571_27_19
Type: pfam
Location: 17602 - 18252 (+)
Type: pfam
Location: 17602 - 18252 (+)
Gene ID: HRGMv2_4571_27_20
Type: TF
Location: 18265 - 18696 (+)
Type: TF
Location: 18265 - 18696 (+)
Gene ID: HRGMv2_4571_27_21
Type: TC
Location: 18931 - 20331 (-)
Type: TC
Location: 18931 - 20331 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus
Species
Ruminococcus sp937880065
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.