Cluster: HRGMv2_4571_CGC12
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4571
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4571_24 | HRGMv2_4571_24_16 | 15708 | 16370 | - | 5.A.1.2.7 |
| pfam | HRGMv2_4571_24 | HRGMv2_4571_24_17 | 16605 | 18092 | + | Dockerin_1 | LRR_5 | LRR_5 | LRR_5 |
| TF | HRGMv2_4571_24 | HRGMv2_4571_24_18 | 18274 | 18648 | + | GntR |
| TC | HRGMv2_4571_24 | HRGMv2_4571_24_19 | 18651 | 19532 | + | 3.A.1.149.1 |
| pfam | HRGMv2_4571_24 | HRGMv2_4571_24_20 | 19529 | 21079 | + | ABC2_membrane_5 |
| peptidase | HRGMv2_4571_24 | HRGMv2_4571_24_21 | 21069 | 21941 | + | G05.UPW |
| CAZyme | HRGMv2_4571_24 | HRGMv2_4571_24_22 | 21987 | 24761 | - | CBM13 | CBM13 | GH43_4 |
Gene ID: HRGMv2_4571_24_16
Type: TC
Location: 15708 - 16370 (-)
Type: TC
Location: 15708 - 16370 (-)
Gene ID: HRGMv2_4571_24_17
Type: pfam
Location: 16605 - 18092 (+)
Type: pfam
Location: 16605 - 18092 (+)
Gene ID: HRGMv2_4571_24_18
Type: TF
Location: 18274 - 18648 (+)
Type: TF
Location: 18274 - 18648 (+)
Gene ID: HRGMv2_4571_24_19
Type: TC
Location: 18651 - 19532 (+)
Type: TC
Location: 18651 - 19532 (+)
Gene ID: HRGMv2_4571_24_20
Type: pfam
Location: 19529 - 21079 (+)
Type: pfam
Location: 19529 - 21079 (+)
Gene ID: HRGMv2_4571_24_21
Type: peptidase
Location: 21069 - 21941 (+)
Type: peptidase
Location: 21069 - 21941 (+)
Gene ID: HRGMv2_4571_24_22
Type: CAZyme
Location: 21987 - 24761 (-)
Type: CAZyme
Location: 21987 - 24761 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus
Species
Ruminococcus sp937880065
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.