Cluster: HRGMv2_4571_CGC11
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4571
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4571_23 | HRGMv2_4571_23_16 | 15047 | 17134 | - | CBM79 | CBM79 | GH5_4 |
| peptidase | HRGMv2_4571_23 | HRGMv2_4571_23_17 | 17475 | 18482 | + | S11.UPW |
| TC | HRGMv2_4571_23 | HRGMv2_4571_23_18 | 18719 | 20644 | - | 3.A.1.121.4 |
| pfam | HRGMv2_4571_23 | HRGMv2_4571_23_19 | 20768 | 21307 | - | ECF-ribofla_trS |
| CAZyme | HRGMv2_4571_23 | HRGMv2_4571_23_20 | 21516 | 24611 | - | CBM13 | PL11 |
Gene ID: HRGMv2_4571_23_16
Type: CAZyme
Location: 15047 - 17134 (-)
Type: CAZyme
Location: 15047 - 17134 (-)
Gene ID: HRGMv2_4571_23_17
Type: peptidase
Location: 17475 - 18482 (+)
Type: peptidase
Location: 17475 - 18482 (+)
Gene ID: HRGMv2_4571_23_18
Type: TC
Location: 18719 - 20644 (-)
Type: TC
Location: 18719 - 20644 (-)
Gene ID: HRGMv2_4571_23_19
Type: pfam
Location: 20768 - 21307 (-)
Type: pfam
Location: 20768 - 21307 (-)
Gene ID: HRGMv2_4571_23_20
Type: CAZyme
Location: 21516 - 24611 (-)
Type: CAZyme
Location: 21516 - 24611 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus
Species
Ruminococcus sp937880065
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.