Cluster: HRGMv2_4571_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4571
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4571_4 | HRGMv2_4571_4_15 | 17895 | 19448 | + | 3.A.1.121.4 |
| CAZyme | HRGMv2_4571_4 | HRGMv2_4571_4_16 | 19748 | 21247 | + | GH16_3 |
| pfam | HRGMv2_4571_4 | HRGMv2_4571_4_17 | 21250 | 21687 | + | Acetyltransf_1 | Acetyltransf_7 | Acetyltransf_9 | Acetyltransf_10 |
| pfam | HRGMv2_4571_4 | HRGMv2_4571_4_18 | 21700 | 22092 | + | DUF3795 |
| CAZyme | HRGMv2_4571_4 | HRGMv2_4571_4_19 | 22112 | 24577 | - | CBM13 | PL1_8 |
Gene ID: HRGMv2_4571_4_15
Type: TC
Location: 17895 - 19448 (+)
Type: TC
Location: 17895 - 19448 (+)
Gene ID: HRGMv2_4571_4_16
Type: CAZyme
Location: 19748 - 21247 (+)
Type: CAZyme
Location: 19748 - 21247 (+)
Gene ID: HRGMv2_4571_4_17
Type: pfam
Location: 21250 - 21687 (+)
Type: pfam
Location: 21250 - 21687 (+)
Gene ID: HRGMv2_4571_4_18
Type: pfam
Location: 21700 - 22092 (+)
Type: pfam
Location: 21700 - 22092 (+)
Gene ID: HRGMv2_4571_4_19
Type: CAZyme
Location: 22112 - 24577 (-)
Type: CAZyme
Location: 22112 - 24577 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus
Species
Ruminococcus sp937880065
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.