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Cluster: HRGMv2_4569_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4569_11 HRGMv2_4569_11_27 34737 35720 + GT2
peptidase HRGMv2_4569_11 HRGMv2_4569_11_28 35883 37148 - S09.UPD
STP HRGMv2_4569_11 HRGMv2_4569_11_29 37288 38661 - PALP
CAZyme HRGMv2_4569_11 HRGMv2_4569_11_30 39240 39890 - CBM13
TC HRGMv2_4569_11 HRGMv2_4569_11_31 40257 42737 + 3.A.3.23.2
STP HRGMv2_4569_11 HRGMv2_4569_11_32 42833 43495 - Pribosyltran
TC HRGMv2_4569_11 HRGMv2_4569_11_33 43510 44493 - 3.A.11.1.4
Gene ID: HRGMv2_4569_11_27
Type: CAZyme
Location: 34737 - 35720 (+)
Gene ID: HRGMv2_4569_11_28
Type: peptidase
Location: 35883 - 37148 (-)
Gene ID: HRGMv2_4569_11_29
Type: STP
Location: 37288 - 38661 (-)
Gene ID: HRGMv2_4569_11_30
Type: CAZyme
Location: 39240 - 39890 (-)
Gene ID: HRGMv2_4569_11_31
Type: TC
Location: 40257 - 42737 (+)
Gene ID: HRGMv2_4569_11_32
Type: STP
Location: 42833 - 43495 (-)
Gene ID: HRGMv2_4569_11_33
Type: TC
Location: 43510 - 44493 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4569_11_27 vegetarian > omnivore 1.25231 0.04443

🧭 Explore Read Mapping of CGC

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