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Cluster: HRGMv2_4569_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4569_5 HRGMv2_4569_5_10 10912 12279 + 3.A.1.1.45
TC HRGMv2_4569_5 HRGMv2_4569_5_11 12415 13338 + 3.A.1.1.45
TC HRGMv2_4569_5 HRGMv2_4569_5_12 13338 14186 + 3.A.1.1.45
TF HRGMv2_4569_5 HRGMv2_4569_5_13 14428 15153 + MerR
pfam HRGMv2_4569_5 HRGMv2_4569_5_14 15190 16698 + Apiosidase | DUF5060 | DUF5605
CAZyme HRGMv2_4569_5 HRGMv2_4569_5_15 16769 18349 - GH5_46
pfam HRGMv2_4569_5 HRGMv2_4569_5_16 18562 19116 - Flavin_Reduct
TC HRGMv2_4569_5 HRGMv2_4569_5_17 19184 20026 - 8.A.5.1.4
pfam HRGMv2_4569_5 HRGMv2_4569_5_18 20062 20901 - Aldo_ket_red
TC HRGMv2_4569_5 HRGMv2_4569_5_19 21015 22001 - 8.A.5.1.6
Gene ID: HRGMv2_4569_5_10
Type: TC
Location: 10912 - 12279 (+)
Gene ID: HRGMv2_4569_5_11
Type: TC
Location: 12415 - 13338 (+)
Gene ID: HRGMv2_4569_5_12
Type: TC
Location: 13338 - 14186 (+)
Gene ID: HRGMv2_4569_5_13
Type: TF
Location: 14428 - 15153 (+)
Gene ID: HRGMv2_4569_5_14
Type: pfam
Location: 15190 - 16698 (+)
Gene ID: HRGMv2_4569_5_15
Type: CAZyme
Location: 16769 - 18349 (-)
Gene ID: HRGMv2_4569_5_16
Type: pfam
Location: 18562 - 19116 (-)
Gene ID: HRGMv2_4569_5_17
Type: TC
Location: 19184 - 20026 (-)
Gene ID: HRGMv2_4569_5_18
Type: pfam
Location: 20062 - 20901 (-)
Gene ID: HRGMv2_4569_5_19
Type: TC
Location: 21015 - 22001 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4569_5_12 vegetarian > vegan 1.20427 0.00863

🧭 Explore Read Mapping of CGC

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