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Cluster: HRGMv2_4567_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4567_8 HRGMv2_4567_8_40 40248 41873 - GH2
TC HRGMv2_4567_8 HRGMv2_4567_8_41 42144 43580 + 3.D.6.1.2
TC HRGMv2_4567_8 HRGMv2_4567_8_42 43582 44631 + 3.D.6.1.2
TC HRGMv2_4567_8 HRGMv2_4567_8_43 44631 45377 + 3.D.6.1.3
TC HRGMv2_4567_8 HRGMv2_4567_8_44 45390 46064 + 3.D.6.1.2
TC HRGMv2_4567_8 HRGMv2_4567_8_45 46064 46648 + 3.D.6.1.2
TC HRGMv2_4567_8 HRGMv2_4567_8_46 46664 47458 + 3.D.6.1.1
Gene ID: HRGMv2_4567_8_40
Type: CAZyme
Location: 40248 - 41873 (-)
Gene ID: HRGMv2_4567_8_41
Type: TC
Location: 42144 - 43580 (+)
Gene ID: HRGMv2_4567_8_42
Type: TC
Location: 43582 - 44631 (+)
Gene ID: HRGMv2_4567_8_43
Type: TC
Location: 44631 - 45377 (+)
Gene ID: HRGMv2_4567_8_44
Type: TC
Location: 45390 - 46064 (+)
Gene ID: HRGMv2_4567_8_45
Type: TC
Location: 46064 - 46648 (+)
Gene ID: HRGMv2_4567_8_46
Type: TC
Location: 46664 - 47458 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4567_8_44 vegetarian > omnivore 1.07223 0.00106

🧭 Explore Read Mapping of CGC

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