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Cluster: HRGMv2_4567_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4567_1 HRGMv2_4567_1_102 114108 115340 - 2.A.66.2.10
CAZyme HRGMv2_4567_1 HRGMv2_4567_1_103 115366 116124 - GT32
NULL(UNKNOWN) HRGMv2_4567_1 HRGMv2_4567_1_104 116121 117569 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4567_1 HRGMv2_4567_1_105 117553 118632 - GT4
CAZyme HRGMv2_4567_1 HRGMv2_4567_1_106 118681 119694 - GT2
pfam HRGMv2_4567_1 HRGMv2_4567_1_107 119783 121186 - Wzy_C
TC HRGMv2_4567_1 HRGMv2_4567_1_108 121292 123316 - 9.B.18.2.1
pfam HRGMv2_4567_1 HRGMv2_4567_1_109 123449 124753 - ALGX
TC HRGMv2_4567_1 HRGMv2_4567_1_110 124766 126214 - 2.A.50.2.1
pfam HRGMv2_4567_1 HRGMv2_4567_1_111 126283 127125 - R3H | KH_KhpA-B | Jag_N
TC HRGMv2_4567_1 HRGMv2_4567_1_112 127144 128574 - 2.A.9.3.4
Gene ID: HRGMv2_4567_1_102
Type: TC
Location: 114108 - 115340 (-)
Gene ID: HRGMv2_4567_1_103
Type: CAZyme
Location: 115366 - 116124 (-)
Gene ID: HRGMv2_4567_1_104
Type:
Location: 116121 - 117569 (-)
Gene ID: HRGMv2_4567_1_105
Type: CAZyme
Location: 117553 - 118632 (-)
Gene ID: HRGMv2_4567_1_106
Type: CAZyme
Location: 118681 - 119694 (-)
Gene ID: HRGMv2_4567_1_107
Type: pfam
Location: 119783 - 121186 (-)
Gene ID: HRGMv2_4567_1_108
Type: TC
Location: 121292 - 123316 (-)
Gene ID: HRGMv2_4567_1_109
Type: pfam
Location: 123449 - 124753 (-)
Gene ID: HRGMv2_4567_1_110
Type: TC
Location: 124766 - 126214 (-)
Gene ID: HRGMv2_4567_1_111
Type: pfam
Location: 126283 - 127125 (-)
Gene ID: HRGMv2_4567_1_112
Type: TC
Location: 127144 - 128574 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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