Cluster: HRGMv2_4556_CGC8
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4556
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4556_51 | HRGMv2_4556_51_1 | 396 | 1304 | - | GH25 |
| pfam | HRGMv2_4556_51 | HRGMv2_4556_51_2 | 1309 | 2139 | - | Ubie_methyltran | Methyltransf_11 | Methyltransf_25 | Methyltransf_31 | Zn_ribbon_RlmA |
| TC | HRGMv2_4556_51 | HRGMv2_4556_51_3 | 2136 | 3530 | - | 2.A.66.1.45 |
Gene ID: HRGMv2_4556_51_1
Type: CAZyme
Location: 396 - 1304 (-)
Type: CAZyme
Location: 396 - 1304 (-)
Gene ID: HRGMv2_4556_51_2
Type: pfam
Location: 1309 - 2139 (-)
Type: pfam
Location: 1309 - 2139 (-)
Gene ID: HRGMv2_4556_51_3
Type: TC
Location: 2136 - 3530 (-)
Type: TC
Location: 2136 - 3530 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Vescimonas
Species
Vescimonas sp934589835
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4556_51_1 | vegan > omnivore | 1.18480 | 0.02312 |
| HRGMv2_4556_51_1 | vegetarian > omnivore | 1.60551 | 0.00433 |
| HRGMv2_4556_51_2 | vegan > omnivore | 1.30999 | 0.02254 |
| HRGMv2_4556_51_2 | vegetarian > omnivore | 1.41802 | 0.00433 |