dbCAN HGM

Cluster: HRGMv2_4556_CGC7

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	HRGMv2_4556_21	HRGMv2_4556_21_2	1058	2164	+	9.A.23.1.1
STP	HRGMv2_4556_21	HRGMv2_4556_21_3	2303	2872	+	TetR_N
pfam	HRGMv2_4556_21	HRGMv2_4556_21_4	2869	3378	+	CrtO
CAZyme	HRGMv2_4556_21	HRGMv2_4556_21_5	3353	4480	+	GT28
pfam	HRGMv2_4556_21	HRGMv2_4556_21_6	4665	5351	+	RelA_SpoT
STP	HRGMv2_4556_21	HRGMv2_4556_21_7	5663	6028	+	Sigma70_r4
TC	HRGMv2_4556_21	HRGMv2_4556_21_8	6032	7411	+	3.A.5.1.1

Gene ID: HRGMv2_4556_21_2
Type: TC
Location: 1058 - 2164 (+)

Gene ID: HRGMv2_4556_21_3
Type: STP
Location: 2303 - 2872 (+)

Gene ID: HRGMv2_4556_21_4
Type: pfam
Location: 2869 - 3378 (+)

Gene ID: HRGMv2_4556_21_5
Type: CAZyme
Location: 3353 - 4480 (+)

Gene ID: HRGMv2_4556_21_6
Type: pfam
Location: 4665 - 5351 (+)

Gene ID: HRGMv2_4556_21_7
Type: STP
Location: 5663 - 6028 (+)

Gene ID: HRGMv2_4556_21_8
Type: TC
Location: 6032 - 7411 (+)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_4556_21_3	vegan > omnivore	3.48995	0.02312
HRGMv2_4556_21_3	vegetarian > omnivore	4.01766	0.00433
HRGMv2_4556_21_4	vegan > omnivore	1.16170	0.02312
HRGMv2_4556_21_4	vegetarian > omnivore	1.75414	0.00433
HRGMv2_4556_21_5	vegan > omnivore	1.52917	0.02312
HRGMv2_4556_21_5	vegetarian > omnivore	2.18142	0.00433