Cluster: HRGMv2_4556_CGC6
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4556
- CGC Family ID: CGCFAM_02438
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4556_6 | HRGMv2_4556_6_13 | 12920 | 14089 | + | GT9 |
| pfam | HRGMv2_4556_6 | HRGMv2_4556_6_14 | 14082 | 14846 | + | ABC2_membrane |
| TC | HRGMv2_4556_6 | HRGMv2_4556_6_15 | 14858 | 15607 | + | 3.A.1.103.5 |
Gene ID: HRGMv2_4556_6_13
Type: CAZyme
Location: 12920 - 14089 (+)
Type: CAZyme
Location: 12920 - 14089 (+)
Gene ID: HRGMv2_4556_6_14
Type: pfam
Location: 14082 - 14846 (+)
Type: pfam
Location: 14082 - 14846 (+)
Gene ID: HRGMv2_4556_6_15
Type: TC
Location: 14858 - 15607 (+)
Type: TC
Location: 14858 - 15607 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Vescimonas
Species
Vescimonas sp934589835
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4556_6_14 | vegan > omnivore | 1.23825 | 0.02312 |
| HRGMv2_4556_6_14 | vegetarian > omnivore | 2.09824 | 0.00433 |
| HRGMv2_4556_6_15 | vegan > omnivore | 1.69979 | 0.02254 |
| HRGMv2_4556_6_15 | vegetarian > omnivore | 2.07204 | 0.00433 |