Cluster: HRGMv2_4556_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4556
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4556_4 | HRGMv2_4556_4_39 | 39402 | 41294 | + | CBM48 | GH13_9 |
| pfam | HRGMv2_4556_4 | HRGMv2_4556_4_40 | 41291 | 42499 | + | NTP_transferase | Hexapep_GlmU |
| pfam | HRGMv2_4556_4 | HRGMv2_4556_4_41 | 42496 | 43608 | + | NTP_transferase | Hexapep_GlmU |
| CAZyme | HRGMv2_4556_4 | HRGMv2_4556_4_42 | 43635 | 45068 | + | GT5 |
| CAZyme | HRGMv2_4556_4 | HRGMv2_4556_4_43 | 45101 | 47518 | + | GT35 |
| TC | HRGMv2_4556_4 | HRGMv2_4556_4_44 | 47614 | 48777 | + | 3.A.18.1.1 |
Gene ID: HRGMv2_4556_4_39
Type: CAZyme
Location: 39402 - 41294 (+)
Type: CAZyme
Location: 39402 - 41294 (+)
Gene ID: HRGMv2_4556_4_40
Type: pfam
Location: 41291 - 42499 (+)
Type: pfam
Location: 41291 - 42499 (+)
Gene ID: HRGMv2_4556_4_41
Type: pfam
Location: 42496 - 43608 (+)
Type: pfam
Location: 42496 - 43608 (+)
Gene ID: HRGMv2_4556_4_42
Type: CAZyme
Location: 43635 - 45068 (+)
Type: CAZyme
Location: 43635 - 45068 (+)
Gene ID: HRGMv2_4556_4_43
Type: CAZyme
Location: 45101 - 47518 (+)
Type: CAZyme
Location: 45101 - 47518 (+)
Gene ID: HRGMv2_4556_4_44
Type: TC
Location: 47614 - 48777 (+)
Type: TC
Location: 47614 - 48777 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Vescimonas
Species
Vescimonas sp934589835
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.