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Cluster: HRGMv2_4556_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4556_3 HRGMv2_4556_3_28 25401 26720 + 3.A.1.1.45
TC HRGMv2_4556_3 HRGMv2_4556_3_29 26864 27787 + 3.A.1.1.45
TC HRGMv2_4556_3 HRGMv2_4556_3_30 27787 28644 + 3.A.1.1.45
CAZyme HRGMv2_4556_3 HRGMv2_4556_3_31 28761 30263 + GH77
TC HRGMv2_4556_3 HRGMv2_4556_3_32 30319 31656 - 2.A.40.1.4
pfam HRGMv2_4556_3 HRGMv2_4556_3_33 32029 32784 + BPL_C | BPL_LplA_LipB | BPL_LplA_LipB_2
TC HRGMv2_4556_3 HRGMv2_4556_3_34 32794 33336 + 2.A.51.1.6
TC HRGMv2_4556_3 HRGMv2_4556_3_35 33333 33896 + 2.A.51.1.6
TC HRGMv2_4556_3 HRGMv2_4556_3_36 33963 35132 - 3.A.1.1.22
Gene ID: HRGMv2_4556_3_28
Type: TC
Location: 25401 - 26720 (+)
Gene ID: HRGMv2_4556_3_29
Type: TC
Location: 26864 - 27787 (+)
Gene ID: HRGMv2_4556_3_30
Type: TC
Location: 27787 - 28644 (+)
Gene ID: HRGMv2_4556_3_31
Type: CAZyme
Location: 28761 - 30263 (+)
Gene ID: HRGMv2_4556_3_32
Type: TC
Location: 30319 - 31656 (-)
Gene ID: HRGMv2_4556_3_33
Type: pfam
Location: 32029 - 32784 (+)
Gene ID: HRGMv2_4556_3_34
Type: TC
Location: 32794 - 33336 (+)
Gene ID: HRGMv2_4556_3_35
Type: TC
Location: 33333 - 33896 (+)
Gene ID: HRGMv2_4556_3_36
Type: TC
Location: 33963 - 35132 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4556_3_33 vegan > omnivore 3.08079 0.02312
HRGMv2_4556_3_33 vegetarian > omnivore 3.58600 0.00433

🧭 Explore Read Mapping of CGC

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