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Cluster: HRGMv2_4556_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4556_2 HRGMv2_4556_2_14 34073 34807 - 3.A.1.3.15
TC HRGMv2_4556_2 HRGMv2_4556_2_15 34800 35459 - 3.A.1.3.15
STP HRGMv2_4556_2 HRGMv2_4556_2_16 35506 36357 - SBP_bac_3
CAZyme HRGMv2_4556_2 HRGMv2_4556_2_17 36600 37382 + CE4
TC HRGMv2_4556_2 HRGMv2_4556_2_18 37569 38276 - 3.A.1.4.10
TC HRGMv2_4556_2 HRGMv2_4556_2_19 38273 39118 - 3.A.1.4.10
TC HRGMv2_4556_2 HRGMv2_4556_2_20 39115 40110 - 3.A.1.4.8
TC HRGMv2_4556_2 HRGMv2_4556_2_21 40121 40999 - 3.A.1.4.10
TC HRGMv2_4556_2 HRGMv2_4556_2_22 41093 42277 - 3.A.1.4.10
NULL(UNKNOWN) HRGMv2_4556_2 HRGMv2_4556_2_23 42390 42596 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4556_2 HRGMv2_4556_2_24 42939 43754 - GT8
CAZyme HRGMv2_4556_2 HRGMv2_4556_2_25 44151 45281 + CE9
TC HRGMv2_4556_2 HRGMv2_4556_2_26 45737 47431 + 3.A.15.4.1
TC HRGMv2_4556_2 HRGMv2_4556_2_27 47442 48497 + 3.A.15.2.1
TC HRGMv2_4556_2 HRGMv2_4556_2_28 48526 49734 + 3.A.15.2.1
pfam HRGMv2_4556_2 HRGMv2_4556_2_29 49815 50261 + N_methyl
TC HRGMv2_4556_2 HRGMv2_4556_2_30 50372 51169 + 3.A.15.2.1
Gene ID: HRGMv2_4556_2_14
Type: TC
Location: 34073 - 34807 (-)
Gene ID: HRGMv2_4556_2_15
Type: TC
Location: 34800 - 35459 (-)
Gene ID: HRGMv2_4556_2_16
Type: STP
Location: 35506 - 36357 (-)
Gene ID: HRGMv2_4556_2_17
Type: CAZyme
Location: 36600 - 37382 (+)
Gene ID: HRGMv2_4556_2_18
Type: TC
Location: 37569 - 38276 (-)
Gene ID: HRGMv2_4556_2_19
Type: TC
Location: 38273 - 39118 (-)
Gene ID: HRGMv2_4556_2_20
Type: TC
Location: 39115 - 40110 (-)
Gene ID: HRGMv2_4556_2_21
Type: TC
Location: 40121 - 40999 (-)
Gene ID: HRGMv2_4556_2_22
Type: TC
Location: 41093 - 42277 (-)
Gene ID: HRGMv2_4556_2_23
Type:
Location: 42390 - 42596 (-)
Gene ID: HRGMv2_4556_2_24
Type: CAZyme
Location: 42939 - 43754 (-)
Gene ID: HRGMv2_4556_2_25
Type: CAZyme
Location: 44151 - 45281 (+)
Gene ID: HRGMv2_4556_2_26
Type: TC
Location: 45737 - 47431 (+)
Gene ID: HRGMv2_4556_2_27
Type: TC
Location: 47442 - 48497 (+)
Gene ID: HRGMv2_4556_2_28
Type: TC
Location: 48526 - 49734 (+)
Gene ID: HRGMv2_4556_2_29
Type: pfam
Location: 49815 - 50261 (+)
Gene ID: HRGMv2_4556_2_30
Type: TC
Location: 50372 - 51169 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4556_2_15 vegan > omnivore 1.05803 0.02312
HRGMv2_4556_2_24 vegetarian > vegan 1.37219 0.01057
HRGMv2_4556_2_27 vegan > omnivore 2.14664 0.02312
HRGMv2_4556_2_27 vegetarian > omnivore 1.64568 0.00433
HRGMv2_4556_2_30 vegetarian > omnivore 1.16517 0.00433

🧭 Explore Read Mapping of CGC

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