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Cluster: HRGMv2_4555_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4555_70 HRGMv2_4555_70_2 707 1270 - 2.A.88.3.1
TC HRGMv2_4555_70 HRGMv2_4555_70_3 1652 3025 + 2.A.66.1.33
STP HRGMv2_4555_70 HRGMv2_4555_70_4 3079 4191 - Fer4 | Fer4
CAZyme HRGMv2_4555_70 HRGMv2_4555_70_5 4260 5546 - GH18
pfam HRGMv2_4555_70 HRGMv2_4555_70_6 5689 6330 + ACPS
NULL(UNKNOWN) HRGMv2_4555_70 HRGMv2_4555_70_7 6539 7189 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4555_70 HRGMv2_4555_70_8 7458 8861 + 3.D.6.1.2
Gene ID: HRGMv2_4555_70_2
Type: TC
Location: 707 - 1270 (-)
Gene ID: HRGMv2_4555_70_3
Type: TC
Location: 1652 - 3025 (+)
Gene ID: HRGMv2_4555_70_4
Type: STP
Location: 3079 - 4191 (-)
Gene ID: HRGMv2_4555_70_5
Type: CAZyme
Location: 4260 - 5546 (-)
Gene ID: HRGMv2_4555_70_6
Type: pfam
Location: 5689 - 6330 (+)
Gene ID: HRGMv2_4555_70_7
Type:
Location: 6539 - 7189 (-)
Gene ID: HRGMv2_4555_70_8
Type: TC
Location: 7458 - 8861 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4555_70_2 vegetarian > vegan 1.25355 0.00022
HRGMv2_4555_70_3 vegetarian > vegan 1.40611 0.00022

🧭 Explore Read Mapping of CGC

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